Citrus sinensis (Valencia orange): 102609367
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Entry
102609367 CDS
T02983
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38 isoform X2
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03013
Nucleocytoplasmic transport
cit03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102609367
03015 mRNA surveillance pathway
102609367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102609367
Enzymes [BR:
cit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102609367
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102609367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF8160
IgD1_Trs65
Motif
Other DBs
NCBI-GeneID:
102609367
NCBI-ProteinID:
XP_006492655
LinkDB
All DBs
Position
2:complement(join(1363903..1363959,1364139..1364224,1364650..1364761,1364859..1365260,1365702..1365767,1366171..1366398,1366554..1366847,1367414..1367677))
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AA seq
502 aa
AA seq
DB search
MADATENPAAPATLEPLPSTEPKRSWGDVAEEEEEKEKEERKQQQQQQTANTSEDKSTAE
LDVEGLTIDESKKVNKFLDEAEDSSIKTVTTGDTPYTSATTFEDLNLSPELLKGLYVEMK
FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPT
RELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSA
KKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFV
TRIVKDYNQLFVKKEELSLESVKQYKVYCPDELAKVMVIRDRIFELGEKMGQTIIFVRTK
NSASALHKALKDFGYEVTTIMGATIQEERDKIVKEFKDGLTQVLISTDVLARGFDQQQVN
LIVNYDPPVKHGKHLEPDCEVYLHRIGRAGRFGRKGVVFNLLMDGDDMIIMEKIERYFDI
KVTEVRNSDEDFKAALKAAGLL
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgcaaccgaaaacccagcagctcctgccacgttagagccgttgccatcaacg
gagccgaagcgatcgtggggcgacgtagcggaggaggaggaggagaaggagaaagaggag
cggaagcagcagcagcagcagcaaaccgctaacacatctgaggataaatcaacggcggaa
ctggacgtcgagggtttgactattgatgagagcaagaaagtcaacaagttccttgacgaa
gctgaagactctagcatcaaaaccgttacgactggtgatacaccttatacctccgcaact
acatttgaagatttgaatctctcaccagagctcctaaagggattatacgtggaaatgaaa
ttccagaagcctagcaagattcaagccatcagtttgcctatgatcttgactcctccctac
agaaatttgattgctcaggcacgtaatggttctggcaagacgacttgttttgtgcttggg
atgttgagccgtgttgatccaaacctcaaggctccacaagcactttgcatttgtcctacc
agagaattggcaattcagaatttggaggttcttcgtaagatggggaagcacacagggata
acttcagaatgtgctgtgccaacagacagcaccaattatgtgccaatatcaaaaaggcca
ccagttacagcacaagtagtgattggcactcctggtaccattaagaaatggatgtcagca
aagaaattgggtttcagtcgtttgaaaattcttgtgtatgatgaggccgatcacatgctt
gatgaggctggctttagagatgattctttgaggattatgaaggacattgaaagaagcagt
ggtcattgccaggttcttctattttcagccacattcaacgaaactgtcaagaattttgta
acaaggattgttaaagattataatcaactttttgtcaagaaagaagagttgtcattagaa
tcagtaaagcagtataaagtttactgtcctgacgaacttgccaaggttatggtaatcagg
gatagaatttttgaactgggagaaaaaatggggcagacaattatatttgtccgcacaaag
aatagtgcaagcgcgttgcataaagcacttaaagattttggttatgaagtcactacaatt
atgggtgctacaatccaggaagaacgagacaaaattgttaaagagtttaaagatggatta
acacaagttcttatatcaactgacgttcttgcccgaggttttgatcagcagcaggttaat
cttattgtaaattatgatcctccggtgaaacatggaaaacatttagagcctgattgtgaa
gtatacctgcatagaattggccgggcaggacgctttggccgcaaaggagttgtgtttaat
ttgttgatggatggtgatgatatgattatcatggaaaaaattgaacggtactttgacatc
aaagtaactgaggtccggaacagcgacgaggacttcaaggcagcacttaaggcagccggt
ttgctgtga
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