Citrus sinensis (Valencia orange): 102609391
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Entry
102609391 CDS
T02983
Name
(RefSeq) exosome complex exonuclease RRP46 homolog isoform X1
KO
K12590
exosome complex component RRP46
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102609391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102609391
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
102609391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
102609391
NCBI-ProteinID:
XP_006476041
LinkDB
All DBs
Position
1:complement(join(3180971..3181086,3181690..3181822,3182156..3182223,3182311..3182383,3182543..3182563,3182671..3182771,3182913..3183026,3183117..3183222))
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AA seq
243 aa
AA seq
DB search
MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSFIIQVVHDDGALLPCAI
NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKAFAYLVFPNSILSVLP
EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS
KAG
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcgatagagctgatgggcgtaaccctaatcaattgagaccacttgcttgctct
tgcagcatccttcaccgtgcgcatggctctgccagttggtctcaaggagacacaaaagtg
ctggctgctgtttacggacccaaagctggaacaaagaagaatgaaaatcctgagaaggct
agcattgaagtcatttggaaacctagaactggacagattgggaaaccagaaaaagagtac
gagataatattgaagcggactttgcagagcatatgcattttgactatcaatccaaatacc
acaacctcatttataattcaggtcgtccatgatgacggtgctcttctaccttgtgccata
aatgcagcatgtgctgcccttgtggatgctggaattcctatgaagcatcttgctgttgca
atatgttgttgctcggcagagagtggatattgtatactggatcccactaagttagaagag
cagaaaatgaaggccttcgcttatttagtctttccaaactcaatactctcggtccttccg
gaagggtcatcacttgtgcaaggtgaacccatggaacatgggatcattacatctgttacc
catggtgcaatgtcagtggacgactattttcactgtctagaaaggggccgagctgcaagt
gctaaattgtctgattttctgaggaggagcttgcagtcaaaattaccaggagatttatcc
aaagcaggatga
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