KEGG T02983: 102609520

Citrus sinensis (Valencia orange): 102609520

Entry

102609520         CDS       T02983

Name

(RefSeq) uncharacterized protein LOC102609520

K10756

replication factor C subunit 3/5

Organism

cit Citrus sinensis (Valencia orange)

Pathway

cit03030

DNA replication

cit03410

Base excision repair

cit03420

Nucleotide excision repair

cit03430

Mismatch repair

Brite

KEGG Orthology (KO) [BR:cit00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102609520
   03410 Base excision repair
    102609520
   03420 Nucleotide excision repair
    102609520
   03430 Mismatch repair
    102609520
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cit03032]
    102609520
   03036 Chromosome and associated proteins [BR:cit03036]
    102609520
   03400 DNA repair and recombination proteins [BR:cit03400]
    102609520
DNA replication proteins [BR:cit03032]
Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    102609520
  DNA Replication Termination Factors
   ELG1-RFC complex
    102609520
Chromosome and associated proteins [BR:cit03036]
Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    102609520
DNA repair and recombination proteins [BR:cit03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     102609520
  Check point factors
   HRAD17(Rad24)-RFC complex
    102609520

SSDB

Motif

Pfam:

RFC_C RCF1-5-like_lid AAA_16 TIP49 nSTAND3 DUF6166 AAA_5

Other DBs

NCBI-GeneID:

102609520

NCBI-ProteinID:

XP_015381181

LinkDB

Position

7:complement(join(2109006..2109067,2109191..2109236,2109323..2109397,2109486..2109555,2109659..2109754,2110044..2110180,2110274..2110455,2110530..2110707,2111154..2111186,2111282..2111392,2111470..2112750))

AA seq 756 aa
MESSSRYSGALTLHSHKSAPMKQNKSGYEPSDTETEWQESPWHDHNAKNGGDLADDSNLP
RNISTSLSTSSARHALKIDKDDRFGSPPKFSSPARRRQSSKSPYKPRTYYSVSNLSSMPR
NNVSPSSKSERRRHLSPYKPAVGNTLDDVHETPIRLSEKPNYNRRAMTAPKLRPVLRDKE
QENNHAIVGQKERITSASSLPRNPIRRQREVVSKFEAPTIGELNEMVASAKMFQGPITTT
NAALRFESTDSIGDIFFSRDGFAKNGGVQADVHPRPVIFPQRNSSSHHESRSNSGLGIDQ
TPQRPSLPIPPITPANLIVSRQSSNGKFSSEGSKTSYASVKSSTSSTKFANNRRKTGQAD
AWFSCMKKGSCRKSKSSPEKRAFDETSFIQKAVVIEKLRPFWADKHQPSSLNGFICHKHE
AQLLKELVVDGNCPHILIKGQSGSGKRALAMALLHEIYGDACWNISHDLRYFPVQEKWPT
QVLVPVASSAHHVELNVNLQANAKYALMGLVKEIRDNLAITPEVSNASCKTDHKVIVIYE
VDKAAEHIQYLIKWIMDGYTDSCKLILCCEDDVDIIESVKTHCKVIKVDPPVTHEIMEVL
IQIARKEDFDLSMTFAAKIATKAKQNLRKAIMALEACKALNYPFADDQPIPLGWEEVLIE
LAAEILADPSPKRLVMVRGKIQKLLAEFVHPKLILLKLVEQFLKSVEASLKREIYYWHAY
YDKRLPAGTSALLKLEEFVAKFMSIYRDSCVNRQFV

NT seq 2271 nt +upstreamnt +downstreamnt
atggagagttcatcaagatatagcggggctcttactcttcattctcataaatctgcccca
atgaaacaaaataagagcggatatgaaccgtctgatacggagacagagtggcaagaaagt
ccctggcatgatcacaatgcaaagaacggaggagacctcgctgatgattctaatttacca
agaaacatctccaccagcttgagtacttcttctgcgagacatgctttgaagattgacaaa
gatgacagatttggttctcctcctaaattcagcagcccggctagaaggagacagagcagc
aagtctccttataaaccaagaacttattatagtgttagtaacctttcttctatgcccaga
aataatgttagtccttcctcaaaatctgagcgtcgaagacatttatctccttataaacca
gctgttggtaacactctggatgacgttcatgagacgccaattagattgagtgagaaacca
aattataatcgtagagcaatgactgcaccaaaactgagaccagtattaagagataaagaa
caagagaacaatcatgcgattgtagggcagaaagagaggataacatctgcatcatcattg
ccaaggaacccgattcggagacagagagaagtagtttcaaaattcgaagcaccaacaatt
ggcgaactcaatgaaatggttgccagtgcaaagatgtttcaaggtcctataactactact
aatgctgcactaagatttgaaagcacagactcaattggggacatcttcttttcccgtgat
ggttttgcaaagaatggaggggttcaagctgatgtgcatccaaggccagtgatttttcca
caaagaaactcttcttctcaccatgaaagtagatcaaatagtggtcttggtatcgatcaa
actcctcaaagaccttcactgccaataccacctattacacctgccaacttaattgtcagc
agacagagtagtaatggcaagtttagctccgagggtagcaagacaagttatgctagtgtt
aaatcaagcacaagctccacaaagtttgcaaataacaggcggaagactggccaagcggat
gcatggttttcttgtatgaagaaagggtcgtgcagaaaatcaaaatcatctcctgagaag
agggcatttgatgaaacttcatttattcagaaagcagttgtgattgaaaagttgagacca
ttttgggctgacaagcatcaacctagttctttgaatggattcatatgccacaaacatgaa
gctcagcttctcaaggaacttgttgtggatggaaactgtcctcatatcttgatcaaggga
caatctggttctggtaaaagagcactggccatggccctgctccacgaaatatatggtgac
gcatgttggaatatatctcatgatttaagatacttcccagttcaggaaaaatggccaacg
caagtattggtcccagtagcatccagtgctcaccatgtggagctcaacgttaatttgcaa
gcgaatgctaaatatgcattaatgggtttagtcaaagaaataagagacaaccttgctatt
acccctgaagtcagcaatgcaagttgcaagaccgatcataaagtgatagttatttatgaa
gtcgacaaagcagcagagcacattcagtacctgataaaatggattatggacggctacaca
gattcttgtaaactcatactctgctgtgaagatgatgtagacatcatagaatcagtgaaa
acccactgcaaagttatcaaggttgatcctcctgttacccatgaaataatggaagttctt
attcagatagcaaggaaagaggactttgatctatcaatgacctttgctgctaagattgct
accaaagcgaagcagaacctgaggaaagccatcatggctctagaagcctgcaaagcactc
aactatccttttgccgatgaccaaccaattcctcttggatgggaagaagtgttaatagaa
ttggctgcagaaatactggctgatccatcacctaagagactagttatggtccgaggaaag
attcagaagcttcttgcggagtttgttcacccaaaactgattctcttgaagctagtggaa
caattccttaagagcgttgaggctagcttgaaaagggaaatttattactggcatgcttat
tacgataagaggctcccagctggaacaagcgctttactgaaactggaagaatttgtggcc
aaattcatgagcatatacagagacagttgcgttaatcgccaatttgtgtaa

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