Citrus sinensis (Valencia orange): 102609721
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Entry
102609721 CDS
T02983
Name
(RefSeq) polygalacturonase At1g48100
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit00040
Pentose and glucuronate interconversions
cit01100
Metabolic pathways
Module
cit_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
102609721
Enzymes [BR:
cit01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
102609721
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
DUF4675
NosD
Motif
Other DBs
NCBI-GeneID:
102609721
NCBI-ProteinID:
XP_006470302
LinkDB
All DBs
Position
2:complement(join(5543551..5543940,5544109..5544299,5544439..5544646,5544740..5544961,5545066..5545197,5545665..5545943))
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AA seq
473 aa
AA seq
DB search
MAAACNNLTSLALAILTAFLLGSSSFETCSARDQTKHSIQSSTAHEPSLQGRKLSKFTSY
AYSGAPEEMATSSAIFNVLSYGAKGDGRTDDTKAFEAAWAAACKIEGATMVVPSGSVFLV
GPISFSGPTCQPNILFQLDGKIIAPTNSGAWGSGILQWLEFSKLKGITLTGKGIIDGQGS
VWWHDAPSSYGTADDSASSELKGNMPGTKPTALRFYGSSGVTVTGITIQNSQQTHLKFDD
CTAVQVSDFTASSPGDSPNTDGIHLQNSQDVTIYSSTLACGDDCVSIQTGCSNIDVHNVN
CGPGHGISIGSLGKDNTNACVSKITVRDVTMHNTMTGVRIKTWQGGSGLVQQVTFSNIQV
NNVKSPIVIDQYYCEKSSCHNESSAVQVSNIAYVNIRGTYTEQPAHFACSDILPCTGISL
STVALKPVQSATQPFCWEAYGELKTATDPPINCLRRGMPPNAKSHPYSDSCQN
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgcttgtaataatcttacgagccttgcattagcaattctcacggcattcctt
ctggggtcttctagttttgaaacatgcagcgctagagatcaaaccaagcattcgatacaa
agcagcacagctcacgagccatccctccagggacgcaaattgtcaaagttcacgagttat
gcttattccggagctccggaagaaatggcgacgagctctgctattttcaatgtgttgagc
tacggagccaaaggtgacggtcgcacggatgacacaaaggcatttgaagcagcatgggca
gcggcttgtaagatagagggagcaaccatggtggttccatctggttccgtattccttgtg
ggacccatttccttctcgggccctacctgtcaaccaaacattttatttcagttggatgga
aagatcatagctcctacaaattctggagcttggggatcaggtattttacagtggcttgag
ttctcgaagcttaaggggattacactgacaggtaagggcataatcgacggacaaggctcc
gtctggtggcatgacgcgccctcctcttatggtactgcagatgattcagcaagcagtgag
ctaaaaggaaatatgccggggaccaagccaacggcgctgaggttctatggtagcagtggc
gttacagttaccggcataacaattcaaaacagccagcaaactcacctcaaatttgacgac
tgcacagctgtacaggtttcagacttcactgcttcatctccgggtgacagccccaacacc
gatgggatccacctacagaactcgcaagacgtgaccatttacagcagtactcttgcttgt
ggtgatgattgtgtatcaatacaaactggatgttcaaacatagacgtacacaatgtgaac
tgtggtcctggacatggaataagcattggaagtctgggaaaagataacaccaacgcctgt
gtttcgaaaatcaccgtccgagatgtcacgatgcataacacaatgacaggagtcagaata
aagacatggcagggtggctcaggcttagtgcagcaagtcacgttctcaaacattcaagtc
aacaacgtcaaatctcctattgtaattgaccaatactattgtgaaaagagctcatgccat
aatgaatcttcagctgtccaagtatcaaatatagcctacgtaaatataagaggaacctac
acagaacagcctgcgcactttgcctgcagtgatatcttgccatgcactggtatatctcta
agtacagtagcactaaaaccggtgcagtctgcaacgcaaccattctgttgggaggcatat
ggagagctgaaaactgctactgatcctccgattaattgtttgcggagaggcatgccacca
aatgctaaatctcacccttacagtgactcctgccaaaactag
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