KEGG   Citrus sinensis (Valencia orange): 102609758
Entry
102609758         CDS       T02983                                 
Name
(RefSeq) cell division cycle protein 48 homolog isoform X1
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    102609758
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102609758
   03009 Ribosome biogenesis [BR:cit03009]
    102609758
   04131 Membrane trafficking [BR:cit04131]
    102609758
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cit04147]
    102609758
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     102609758
Ribosome biogenesis [BR:cit03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    102609758
Membrane trafficking [BR:cit04131]
 SNARE
  SNARE associated proteins
   Others
    102609758
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    102609758
Exosome [BR:cit04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   102609758
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N CDC48_2 AAA_16 AAA_33 AAA_2 AAA_5 AAA_22 AAA_14 NPHP3_N TIP49 RNA_helicase nSTAND3 Mg_chelatase AAA_28 AAA_17 ATPase_2 nSTAND_NTPase5 AAA_18 Parvo_NS1 ABC_tran AAA_lid_PRS2_C NB-ARC AAA_7 Viral_helicase1 NACHT DUF815 TsaE IstB_IS21 ResIII Zeta_toxin AAA_24 Vps4_C Zot Molydop_binding
Other DBs
NCBI-GeneID: 102609758
NCBI-ProteinID: XP_006476838
UniProt: A0ACB8LSF8
LinkDB
Position
3:join(3366867..3366916,3367402..3367567,3367650..3367878,3367990..3368756,3368866..3369087,3369381..3369452,3369550..3369831,3370300..3370659,3370775..3371068)
AA seq 813 aa
MADPSSSAPRPASSSDPKSSKKDYSTAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEK
LQFFRGDTVLVKGKKRKDTVCVVLSDELCEESKVRVNKVVRSNLRVRLGDVVSVHPCPDV
KYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIET
DPGEYCVVAPDTEIFCEGEPVKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQL
FKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA
FEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNR
PNSIDPALRRFGRFDREIDIGVPDEVGRLEILRIHTKNMKLAEDVDLERVAKDTHGYVGS
DLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVV
EVPNVSWEDIGGLDNVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAK
AIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS
TGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD
EASRLQIFKACLRKSPISPDVDLSALARYTHGFSGADITEVCQRACKYAIRENIEKDIER
ERRKMENPEAMEEDEVDDVDEIKAVHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGFG
SEFRFADRTESAAAGAADPFSSAAAADDDDLYN
NT seq 2442 nt   +upstreamnt  +downstreamnt
atggctgatcctagctcatctgcgcctcgaccagcttcttcctctgacccgaaaagtagt
aagaaagattattcaactgctattctggaccgcaagaagtctcccaaccgtcttgtcgtt
gatgaagcaatcaatgatgataattctgttatcaccatgcatcctaacactatggaaaaa
cttcagtttttccgaggtgacactgtcttagtaaaggggaagaagcgaaaagacacagtt
tgtgttgttcttagtgatgaactatgtgaagagtcgaaagtcagagtgaacaaagttgta
cgatctaatcttagagttcgtcttggagatgtagtatctgttcatccatgccccgatgtg
aaatatggaaggcgtgttcacatccttcccattgatgatacgatcgagggtgtaactgga
aacttatttgatgcatatttgaagccttatttcatggaatcttaccggccagttaggaaa
ggcgacctttttctagtcaggggtggaatgagaagtgttgaatttaaagtaattgagacg
gaccctggtgaatattgtgttgttgcaccggatactgagatcttctgtgagggcgaacct
gtcaaacgtgaggatgaggagagattaaatgaagtaggctatgatgatgttggtggtgtt
agaaagcaaatggctcaaatccgtgagcttgtagaacttcctcttagacaccctcagctt
ttcaaatcaattggtgtgaagcccccaaaaggtatcttgctttatgggccacctgggtct
ggaaaaaccctgattgcaagggctgttgctaatgagacaggtgcctttttctttttgatt
aatggccctgaaataatgtcaaagttagctggtgaaagtgaaagcaatttaaggaaggca
tttgaagaagctgaaaagaatgcaccatctataatatttatcgatgaattagattccatt
gctccaaagagggagaagacacatggtgaagtggagaggcgtatagtatcccaacttcta
actttgatggatggcctcaagtcccgggcccatgtgattgttatgggagctactaatagg
ccgaatagcattgaccctgctcttaggagatttggaagatttgatcgtgagattgacata
ggtgtacccgatgaagttggaagattggaaattcttaggatccacacaaaaaacatgaaa
cttgctgaagatgttgatcttgaaagagttgcaaaagatacccacggttatgttggttca
gatcttgctgctctctgtacagaggctgcccttcagtgtattagggagaaaatggatgtc
atcgacttagaggatgagactattgacgccgaggtgttgaattcaatggctgtaacaaat
gagcacttccaaactgcattggggacatcaaatccttcggccttacgtgaaactgttgtg
gaggttcctaatgtctcatgggaggatattggtgggttggataatgttaagagagagctt
caagagactgttcaatacccagtggagcatcctgaaaagttcgagaaatttggcatgtca
ccttctaaaggtgttctcttctatggacctcctggctgcggcaaaacccttcttgcaaaa
gctattgctaacgagtgtcaagcaaacttcataagcgtcaaaggacctgagctgctgaca
atgtggtttggagagagtgaggcaaatgtaagggaaatctttgacaaggcacgacagtca
gctccatgtgtgctattctttgatgaacttgattctattgctactcagcgtggcagttct
actggagatgctggcggtgctgcggatagagtactgaatcaacttctaactgaaatggat
gggatgaatgccaaaaaaacagttttcatcataggcgccaccaaccggcctgacatcatc
gatccagcgttgttgaggcctgggcgtttggaccaattgatttatatacccctgccagat
gaggcttcccgtcttcagatatttaaagcttgtttacggaagtcacccatctctcccgat
gttgacctatcagctcttgcacgttatactcatggtttcagtggtgccgatatcactgaa
gtatgtcagcgtgcctgcaaatatgcaattcgagaaaatattgaaaaggatattgagagg
gagaggaggaagatggagaaccctgaagcaatggaagaagatgaggtcgatgatgtcgat
gagattaaggcagtacactttgaggaatcaatgaaatatgcccgccggagtgtcagtgat
gcagacatccggaaataccagctctttgcacagaccttgcaacaatctcgtgggtttggg
tccgaattccggtttgcagatcgtaccgagagtgccgccgctggggctgcagatccattc
tcttctgccgctgctgctgatgatgatgatctatacaactga

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