Citrus sinensis (Valencia orange): 102610175
Help
Entry
102610175 CDS
T02983
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit04120
Ubiquitin mediated proteolysis
cit04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
102610175
04120 Ubiquitin mediated proteolysis
102610175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cit04121
]
102610175
Enzymes [BR:
cit01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102610175
Ubiquitin system [BR:
cit04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
102610175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
FlxA
zf-RING_16
zf-RING_11
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
102610175
NCBI-ProteinID:
XP_006478909
LinkDB
All DBs
Position
3:complement(join(38972139..38972303,38973635..38973914,38974431..38974584,38974893..38975101,38975186..38975335,38976193..38976369,38976996..38977528))
Genome browser
AA seq
555 aa
AA seq
DB search
MMRLQTYAGFSFMATLAVVYHAFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQL
IKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLA
QKRVEYIETTPTVPLFSHIRIVSFMSFLLLVDSLFLYSSVKFLLQTRQASVSLFFSFEYM
ILATTTVSIFVKYVFYVSDMLMEGQWERKAVYTFYLELIRDLLHLSMYLCFFLVIFMNYG
VPLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGASTAGVQHGQRPDTHQSGTAT
ANTASQGSANDAANNNLTLHQARLQAAAVAASVYGKSYVYPSPNTLVWSPGYVVLPQANR
PLGDYTSVELGQEQASAGQPQQFVNPGGSATFSFPQFPQSVFVPFQTPDANLIGGERLPS
TQNTPVSQLEAQRKFIENQIEVLQNQLQLLQKSKPEGNVETNSTVSSGGKGKAVASSSVS
ASDTGRHGENQEIGS
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgcaaacgtacgcggggttcagtttcatggctactttagctgttgtgtac
catgcatttaacagcagaagacaattttacccttccatggtgtatttatcaacttctaag
atcagtttggtgctgcttatgaacatgggtttggtcattatgtgcattttgtggcaattg
atcaagaaggtgtttcttggttctctccgtgaagccgaggttgagaggctgaatgagcag
tcaaggagagagatcatggaaatactctttgctatcacgattttccggcaggacttctct
gtttcgtttcttgctatggtcactacgcttttgctgattaaggctttgcactggttggct
cagaagagggtggagtacattgagactaccccaactgttcccttgttttctcacatccgg
attgtttcttttatgagctttcttcttcttgtggattctttatttttgtacagttctgtc
aagtttctgctacagacacggcaagcttcagtttctcttttcttttcgtttgagtacatg
atactggcgacaacaacagtatcaatatttgtaaaatatgttttctacgtgagtgatatg
cttatggaaggacaatgggaaagaaaggctgtttacaccttctacttggaactcatccga
gacttgcttcatttgtctatgtacctgtgcttctttcttgtgattttcatgaactatggt
gttcctttgcacttaatacgtgagctatatgagacatttaggaatttcaggatccgtgtt
gctgattatgttcgctatcgaaagatcacttcaaatatgaatgatcgatttccagatgca
tcacctgaagagcttgatgcaagtgattcaacctgtattatatgtcgtgaggagatgaca
acagccaagaaattaatttgtggacatcttttccatgtccactgccttcgctcatggttg
gagcgacagcatacctgtcctacctgcagagctttagttgtaccacctgaaaatggggca
agcactgctggagtacaacatggccaaaggccggatactcaccaatcgggtactgctact
gcaaacacagcttcccaaggttcagctaatgatgcggctaacaataacttgactctccac
caggctaggctccaggctgccgctgtcgctgcctcggtatatgggaaatcctatgtttat
ccttctcccaacacactagtttggtctcctggatatgttgtacttcctcaagctaacagg
cctttgggtgattacaccagtgtagaattgggtcaagaacaggcttctgctggtcaacca
cagcagtttgtgaatcctggtggatctgctaccttctcgtttcctcaatttcctcaatca
gtttttgtcccttttcagacacccgacgccaatttgattggtggagaaagactgccaagc
actcaaaatacaccagtctctcagctggaagctcagagaaaatttattgagaaccagatt
gaggtcctgcaaaaccagctccaacttctgcagaagtcaaagcccgagggaaatgtggaa
acaaattctacagtgtcatcaggtggcaaaggaaaggcagttgcatcttcatctgtttct
gcatcagacactgggcgccatggggaaaaccaagaaattggttcatag
DBGET
integrated database retrieval system
