KEGG   Citrus sinensis (Valencia orange): 102610300
Entry
102610300         CDS       T02983                                 
Name
(RefSeq) ubiquitin receptor RAD23d-like
  KO
K10839  UV excision repair protein RAD23
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03420  Nucleotide excision repair
cit04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    102610300
  09124 Replication and repair
   03420 Nucleotide excision repair
    102610300
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:cit03051]
    102610300
   03400 DNA repair and recombination proteins [BR:cit03400]
    102610300
Proteasome [BR:cit03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    102610300
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      102610300
SSDB
Motif
Pfam: XPC-binding UBA ubiquitin Rad60-SLD UBA_7 UBA_RAD5A CUE Rad60-SLD_2 UBA_3 Crinkler Dsc3_N Ubiquitin_5 TECR_N Nucleo_P87
Other DBs
NCBI-GeneID: 102610300
NCBI-ProteinID: XP_006484457
LinkDB
Position
4:join(23274273..23274341,23275606..23275767,23276627..23276677,23277482..23277558,23277675..23277734,23277905..23278082,23279350..23279502,23279581..23279649,23279789..23279836,23279905..23280014,23280260..23280338,23280637..23280753)
AA seq 390 aa
MMKIFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTL
EENKVAENSFVVIMLTKNKRPTGEGSTTSTAPTKAPQSSAPTPAVTPATAPQTAVPISTE
PTPAPTPAPASASVSSVSATSESGVYGHAASNLVAGNNLEGAIQQILDMGGGTWDRDTVV
RALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSPTQMPQPTQPAPVTSSGP
NANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNP
QLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDR
AIVLEVFFACNKNEELAANYLLDHMHEFED
NT seq 1173 nt   +upstreamnt  +downstreamnt
atgatgaagattttcgttaaaactctcaaaggaacttctttcgacgtcgaagtgaaacct
gaagacacggtctttgatgtgaaaatgaagatagaaactgttcaaggatcggatgtttat
cctgctgcacaacagatgctgatttatcaggggaaagtcctcaaagatgatactacactg
gaagagaacaaagtagctgaaaatagttttgttgttattatgttaacaaagaataagaga
ccaactggtgaaggttcaactacgtcaactgcgcctacaaaggctccccagtcaagtgcc
ccaacccctgcagtgaccccagcaacagctcctcagactgccgtgccaatctctacagag
cctacacctgctcctactcctgctcctgcttctgcttctgtgtcatcagtttctgctacg
tcagagtctggtgtgtatgggcatgctgcatctaatctggttgctgggaacaacttggag
ggagcaatccagcagattcttgatatgggtggagggacttgggatagagatactgttgtt
cgtgctcttcgagctgcttataataatcctgagagggctgttgaatatttatattctggt
atacctgagcaagctgaagttcaacctgtggcccgcgcccctggtaatggacaagctgct
aactctccaactcagatgccacagccaacccaaccggcacccgttacttctagtgggcca
aatgcaaatcctttggacctctttcctcagggccttcctgacgtgggttcaggtgcagct
ggcgctggcagtcttgactttttacgtaatagtccacagtttcaagttttgcgagctatg
gtgcaggcaaatcctcaattattgcagcccatgcttcaagagttggggaaacaaaatcct
cagctagtgaggcttattcaggaacatcaggctgacttccttcggcttatcaatgaacct
gttcaaggtggtgaggggaatttgggggaccagcttgctgggttaatgccacagtcaata
caagtcacgcccgaagaacgtgaagccatagaacgtcttgaggcaatgggctttgatcga
gcaattgtattggaggtgttctttgcctgcaacaagaatgaggaacttgctgccaactac
cttttagaccatatgcatgagtttgaggattga

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