Citrus sinensis (Valencia orange): 102611059
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Entry
102611059 CDS
T02983
Name
(RefSeq) putative DEAD-box ATP-dependent RNA helicase 29
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
cit
Citrus sinensis (Valencia orange)
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cit03009
]
102611059
Enzymes [BR:
cit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102611059
Ribosome biogenesis [BR:
cit03009
]
Eukaryotic type
Pre-60S particles
Helicases
102611059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
P-loop_SecA
tRNA_anti-codon
Motif
Other DBs
NCBI-GeneID:
102611059
NCBI-ProteinID:
XP_006472898
LinkDB
All DBs
Position
5:complement(join(33750549..33750766,33750985..33751126,33751274..33751330,33751419..33751500,33752011..33752063,33752226..33752302,33752958..33753003,33753412..33753516,33754534..33754591,33754706..33755867,33756551..33756911))
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AA seq
786 aa
AA seq
DB search
MSLVSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG
ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT
DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL
FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLK
LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM
DQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA
GRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIY
GRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE
GLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKK
RAVHEKIINLVHQQRSSKSMEKEVELEADSSMAKEIKETHGSKRKAKTFKDEEYFISSVP
TNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGE
RVSASGKVVKTESGAQVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLG
GNNRKFRGGKNQQRSVPNAHVRSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNGK
RGKPRK
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcttgtcagctcgaaagcggagctgaaacgcagagagaagcagaaaaagaagtcg
aaatccggcggcttcgagtccttaaacttaagccccaatgtgttcagagcaatcaaacgg
aagggctacaaagtgcccactcccattcagcgcaagaccatgccgttaattctctccggc
gcggacgtcgtagccatggcccgcactggctctggtaaaacggctgcgtttttagtcccc
atgcttcagagattgaaccagcacgtgcctcagggcggcgtcagggctctcattttgtcc
cccacacgtgatttggctctccagaccttgaagtttactaaagagctgggaagatatact
gatcttcgtattagtttactggttggtggggacagcatggaaagtcagtttgaggaatta
gcacagaacccagatattataattgcaactcctggtaggctcatgcaccatttgtccgag
gttgaggacatgtccttaaaatcagtggagtatgttgtttttgatgaagcagattgtctt
tttggcatgggttttgctgagcagttacataaaatccttggccagctcagtgagaaccgt
cagaccttgctttttagtgccacattaccaagtgcacttgctgagtttgccaaggctgga
ctccgtgaccctcatcttgtgcgacttgatgtggacactaagattagccctgacttgaaa
cttgcctttttcactctacggcaggaggaaaaacatgcagcattactgtatatgataagg
gagcatattagttctgatcagcagacattgatctttgtttcaacgaaacatcatgtggag
ttccttaatgtattgttcagagaagagggtttagagccttctgtatgttatggtgatatg
gatcaagatgctcgaaagattcatgtatctaggtttagggctagaaagactatgttctta
attgtgacggatgttgctgccaggggcattgacatccccctacttgataacgttataaac
tgggactttcccccaaagcctaaaatttttgtccatcgagtagggcgagctgcaagggct
gggcgaacaggtactgcattttcttttgtgacatctgaggatatggcataccttttagat
cttcatctgtttctttcaaaaccaataagagctgcaccctctgaggaggaggttttgctg
gatatggatggagttatgtccaagattgatcaagccattgcaaatggagaaactatctat
gggcgatttcctcagacagtcattgatcttgtttcagaccgagttcgagaaatcattgat
tcgtctgcggatctgaattctttgcagagaacttgtacaaatgctttccgcttgtattca
aagacaaaaccattaccttcaaaggagtctattagaagagggaaagatttaccacgcgaa
ggattgcatcctatgttcaaaaatgttctggaaggtggtgaattgatggcactggccttt
tctgaacgtttgaaggctttcaggccaaagcagacaattctggaagctgaaggtgaagca
gccagatcaaagcatctgcagggtccatctagtcaatgggttgatgtgatgaagaagaag
agagcagttcatgagaagatcattaatttggtgcatcagcagcgttctagcaaaagtatg
gaaaaggaagttgaacttgaagcagattcttcgatggctaaggagataaaagaaactcat
ggttctaaaagaaaggcaaagacattcaaagatgaggagtactttataagttcagtgcca
acaaatcatcatatggaagctggcctctcagtgagatctgaccaagggtttggattaaat
aggttggaagctgctgttttagatctagttgcagatgatagtgggggattgcagaaacag
aaacaagtgtatcattgggataagaggggtaaaaagtacatcaagttgaacaatggtgaa
cgtgtttctgctagtggaaaggtggtaaagacagagagtggtgcgcaagtaaaagctact
aaaactgggatatacaagaaatggaaagaacggtctcacaagaaagtatatcttaaagga
gcaagcaatgaagggaatgctgaggaaaccacgagcgtgccaggaggccgtcatctaggt
gggaataatagaaagttcagagggggcaagaatcagcagcgttcagtacctaatgctcac
gtgcgttcagaaattaaagatcttgatcaagttcgaaaggagaggcagaaaaaggcagat
agaatagcttttatgaagggcaaaacccagaagggtaaaaaatttagtaaaaatggaaaa
cgagggaagcctagaaaataa
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