Citrus sinensis (Valencia orange): 102611484
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Entry
102611484 CDS
T02983
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102611484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102611484
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102611484
mRNA degradation factors
5'-3' decay
Decapping complex
102611484
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
102611484
NCBI-ProteinID:
XP_006478033
UniProt:
A0ACB8M336
LinkDB
All DBs
Position
3:complement(join(16817742..16819789,16820924..16820987,16821656..16821712,16822378..16822523,16822635..16822698))
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AA seq
792 aa
AA seq
DB search
MEGFDSGGSIGKAPQFGGNSTEDTVFDASQYAFFGKDVVEEVELGGLEDEEDNLPAPAYD
EEEFLFDKEEGEVLRSLSDIDDLASTFSKLNTDVSGPRGAGIIGDWGSRESSSAAEWVQG
DDYRNLLEQQMLDTEGIPEGKRWSSQPYSFPHITESRPLSRTSSYPEQQQQLLYRTSSYP
EQQQQLQHHHHHFSSEPILVPKSSFTSYPPPGGRSQQASPNQHSGHLNVPYVAGGSQLSS
SPNLSPFSNSQLQMAGLHHGTQYGGKLPQFAPGLSINSRPANQWANQTGLYARDHSGLVN
NMLQQQLSHQNGLMPPQVMQQLQAQQHRLQHPVQPSFGHLPAMQSEVFNSHLSSSPSMMN
NFEAVFGLVDSRDLRPKSAQRRNGGWPQFRSKYMMVDEIEGILRIQLAATHSNDPYIDDY
YHQACLAKKYASAKLKHHFCPTHLRDLPPRARANTEPHAFLQVDALGRVPFSSIRRPRPL
LEVDPPNSQSSGNTEQKITEKPLEEEPMLAARVTIEDGICLLLDVDDIDRFLQFNQTPDG
GNQLRRRRQVLLEGLAASLQLLDPYRNNGHTAGHPPRDDLVFLRIVSLPKGRKLLARYLQ
LLYPGGELMSVVCMAIFRHLRVLFGTLPPDSGAVDTTNNLMRVVISCVHGLDLPALSACL
RAVVYSPEQPPLRSLGSAAGDGVTHILMSVLERAAKLLKDPLAAGNYDNSRSDWQVIFNE
FFNLLWKYSVSKFESVMQSLRVQVPSDVIDAGEVARAIKREVPVELLEATAPLTTDHQKQ
LLYEFSQRSLKP
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggaagggtttgatagtgggggaagtattggaaaagcccctcaatttggtggaaattct
acagaagatacagtatttgatgcatcgcaatatgcattttttggtaaagatgtagtcgag
gaagttgagttgggtggattagaggatgaagaagataatttgccggcacccgcctatgat
gaagaggagtttctctttgataaagaagagggtgaagttttaagatcactatccgatatt
gacgatcttgccagtacattctcaaagttgaacacagatgttagtggaccaagaggtgct
gggataattggtgattggggatccagagaaagttcatctgctgctgaatgggtccaagga
gatgattatcgtaatttgttggagcagcagatgctcgacactgaaggcattccagagggg
aaacggtggtcatcacaaccatattcttttcctcacatcacagaatcaaggcctctgagc
agaacgtcttcataccctgaacagcaacagcagcttctgtatagaacgtcttcatatcct
gagcagcaacagcagctgcaacaccaccaccatcatttctccagcgaaccaattcttgtg
cccaagtcgtctttcacttcgtatcctcccccaggtggtagatctcagcaggcttctcca
aatcaacattccggccacctgaatgttccatatgttgccggtggatcccaattgtcatct
tcaccaaacctctctccattctctaactctcagctgcaaatggctgggttacatcatggg
acacagtatggtggaaagttgcctcagtttgctcctggtctatccattaatagccgtcca
gctaaccagtgggcaaaccagactggcttatatgctagagaccattctggtcttgtgaac
aatatgctgcaacaacagctatctcatcaaaatgggttaatgcctccccaagtaatgcag
caattacaggcacagcagcacaggctgcagcatcctgttcaaccatcatttggccattta
ccagcgatgcaatctgaagtatttaattcccatctttcttcttctccatccatgatgaac
aactttgaggcagtgtttggcctggttgactcaagagatctaagaccgaaatcagctcag
agaagaaatggtgggtggccacagtttagatcgaaatatatgatggtggatgaaattgag
ggtattcttagaattcagcttgcagcaacacacagtaatgacccatacattgatgattat
taccaccaggcctgtctggccaaaaaatatgctagtgcaaagcttaaacatcatttctgc
ccaacacacttgagggatcttcctccacgagcacgtgcaaacactgagccacatgctttt
ctccaggttgatgctcttgggagggttccattctcttcaattcgtaggcctcgccctctt
cttgaagttgatcctccaaattcacagagttctggaaacacggagcagaaaattactgag
aagcccctggaggaggaaccaatgcttgcagctcgagtgacaattgaagatggtatttgc
cttctccttgatgtagatgatattgatcgttttctacagttcaatcagaccccagatggt
ggaaaccagttgagacggaggcggcaagtcctgctggaagggttggcagcctcacttcaa
ttgcttgacccatatcgcaataatggccacacagctgggcatcctcccagggatgatctt
gtgttcttacgaatagtctctctgcccaagggccgaaaactcctggcaaggtaccttcag
cttctctatccaggtggtgagctcatgagtgtagtctgcatggccatttttcgtcattta
agggttttatttggaactctgccccctgactcgggtgcagttgatactacaaataaccta
atgagggttgttatatcatgtgttcatggattggatcttcctgcacttagtgcctgcctt
cgagcagtggtttattccccagagcagcccccacttcgttctcttggaagtgcggccggg
gatggggttacccatatcttaatgtcagtacttgagagggcagctaaacttttgaaagat
ccccttgcagctggcaattatgataatagtcgctcagattggcaggtcatatttaatgaa
ttctttaaccttctctggaagtattcagtaagcaaatttgaaagtgtcatgcagtcccta
cgagtgcaagtaccatctgatgttattgatgcaggggaagttgccagagctattaagagg
gaagtgccagttgaactcttagaggcaactgcccctctcactacagatcaccagaagcag
ttgttatatgagttttctcagaggtccttgaaaccttga
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