Citrus sinensis (Valencia orange): 102612063
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Entry
102612063 CDS
T02983
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 50 isoform X1
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
cit
Citrus sinensis (Valencia orange)
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cit03041
]
102612063
03009 Ribosome biogenesis [BR:
cit03009
]
102612063
Enzymes [BR:
cit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102612063
Spliceosome [BR:
cit03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102612063
Ribosome biogenesis [BR:
cit03009
]
Eukaryotic type
90S particles
Helicases
102612063
Pre-60S particles
102612063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_C_2
ResIII
SNF2-rel_dom
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
102612063
NCBI-ProteinID:
XP_006478533
LinkDB
All DBs
Position
3:join(32203775..32204171,32204535..32205022,32205726..32205920,32206902..32207089,32207417..32207630,32207938..32208069,32208201..32208376,32208507..32208744)
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AA seq
675 aa
AA seq
DB search
MLGRVEQVMLAKAAASFGLPLASPPLRRNSNTDKLMNKCVLPLLNPNPVGRPGARVVLVR
ASGGDGGGGGYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNW
NKDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQE
GRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGS
IHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFP
PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGISKSTSGSPRVVILAPTAELASQ
VLSNCRSLSKFGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLIN
LRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV
MGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIE
TCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASR
GIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRK
GHPLHDVPSAFELMR
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgctaggaagagtagagcaagtcatgttggcgaaagcagcagctagttttggtcttcct
ctggcatcacctccgcttagaagaaacagcaacactgacaaactgatgaacaaatgcgtc
cttccacttctaaacccgaacccagttgggcgacccggagccagagtagttttggttagg
gccagtggtggtgatggcggcggcggtggttacagtcggacgccattagaaacggcaggt
gcctgtgagctaatcgataacgacacaggcgagaaagtgatagtttggggtggaactgac
gacgaccacgaccacgaccctcccattcctccaaagcaccttcttgattcctccaattgg
aacaaggacccctctcaacccaccacttcagctccagttttgagaaacaatgattgttca
attccatccaaaaagggagtgatttctagcttttcaagattgaaagctcagagagtaaaa
gctgttgtagataaacgcagtgccatggggaagaagacggtaaatgccctcaaacaagag
ggaagactttctaaaactacaccgtcgctagaaaacttcagagagcttggagaacacata
gtcgataatgatgtacctgcagaaagcattgataagaacatctcagattataatagtagg
tcgaataaacatgaaaaatcaggcaccaaaatagatagaggatggcgtagtggtggttcc
attcataaccttcaatatgagccaacagactgcccgaagcaaagacataaatattctgcc
gatggagacttttttagtcgaaaatcctttaaagaattaggatgcagtgattatatgatt
gaatccttgaaacggcagaatttccttcgtccttcacagattcaggccatggcatttcca
cctgttgttgagggaaagagctgtattttagctgatcaaagtggatcagggaagacattg
gcatatcttttgcctgtgattcagcgtcttaggcaagaagagctccaaggaattagcaaa
tccacttcaggaagtcctcgggtagttatcttggcaccaacagctgagttggcttctcag
gttttgagtaattgccgatcgttatccaaatttggagttccattccggtctatggttgtg
acaggaggttttcgacagaaaactcaactagaaaatcttcaagaaggtgttgatgtttta
attgctacacctggtcgtttcatgttcttaattaaagaaggaatcttgcagctgataaat
cttagatgtgccattttggatgaagtagatatactctttaatgatgaggattttgaagta
gcactgcaatctttgattagttcttcacctgtcactgcacaatatctatttgtgactgca
actttacctgtagaaatatataacaagctagttgaagtttttccagattgcaaagtagtc
atgggacctggcatgcaccgtataagcccaggtcttgaagagtttctcgtagattgcagt
ggagatcaagaatcagataaaactccagaaacagcttttctcaacaagaaatctgctctt
ctgcagctgattgagaaaagtccagtttccaagacgattgttttctgcaacaagattgag
acatgcagaaaagttgagaatatattgaaacgttttgatagaaaagaaactcgtgtgcga
gttctaccatttcatgctgctcttgaccaagagacaaggcttgcaaatatgaaggagttc
actacttcacgttcgaaagaagcacgtttgtttctagtctgcactgatagagcatctcgt
ggaattgattttgcgggtgtggatcatgttgtactctttgactttccacgtgatcctagt
gaatatgtgcgccgtgttggaagaactgccagaggtgctggaggaacaggcaaagcattc
atatttgttgtcggcaagcaagtttctctcgcgcaaaggataatggaaagaaatcgtaag
ggccatccattgcacgatgtgccatcagcttttgagctaatgcgttga
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