KEGG   Citrus sinensis (Valencia orange): 102612227
Entry
102612227         CDS       T02983                                 
Name
(RefSeq) protein CTR9 homolog isoform X1
  KO
K15176  RNA polymerase-associated protein CTR9
Organism
cit  Citrus sinensis (Valencia orange)
Brite
KEGG Orthology (KO) [BR:cit00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cit03021]
    102612227
Transcription machinery [BR:cit03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    PAF1 complex
     102612227
SSDB
Motif
Pfam: TPR_1 TPR_2 TPR_8 TPR_12 TPR_19 TPR_17 TPR_14 TPR_16 TPR_11 TPR_6 TPR_9 TPR_7 TPR_10 ANAPC3 RPN7 Fis1_TPR_C NatA_aux_su
Other DBs
NCBI-GeneID: 102612227
NCBI-ProteinID: XP_006490821
LinkDB
Position
1:complement(join(12363597..12363767,12364176..12364499,12364925..12364996,12365101..12365367,12365885..12366109,12366184..12366291,12366365..12366466,12368703..12368798,12369044..12369202,12369292..12369372,12370358..12370624,12370793..12370885,12370995..12371063,12372073..12372165,12372273..12372373,12373579..12373663,12374387..12374601,12374737..12374800,12374909..12375025,12375225..12375278,12375839..12375939,12379281..12379475,12380190..12380256,12380550..12380690))
AA seq 1088 aa
MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR
QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA
SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD
SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM
DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS
ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL
ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW
LTLLDSKTKTNVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD
TVAASVLYRLILFKHQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG
DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA
KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL
AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA
PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF
DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL
LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR
RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAA
AGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELRENDHKSN
GGAALDDD
NT seq 3267 nt   +upstreamnt  +downstreamnt
atggcttgcgtgtacatacccgtgcagaattcggaggaggaggtgagagtggcactggat
cagctccctagggacgcctctgatatccttgatattctcaaagcggaacaagcccctctc
gatctctggctcatcatcgcgagggaatacttcaaacaagggaaagtagaacaatttcgt
caaattttggaggaagggtctagtcctgagattgatgaatattatgctgatgttcgatat
gagaggattgcaatattaaatgctttaggggtatactacacctaccttgggaaaattgag
acaaagcaaagagaaaaggaggaacattttattctggcaacacaatactacaacaaagca
tcaagaattgacatgcatgaaccttccacttgggttggcaaaggtcaacttttactggct
aagggtgaagtagaacaggcatcgagtgcttttaagatcgtgctagaggcagatcgtgat
aatgttcctgctctcctgggccaggcatgtgtcgagtttaatcgtggacgttattctgat
tccttggagttttataagagggccttgcaagttcatcccagttgccctggagccataaga
cttggaattggtctctgtcgctataaattgggccaacttgggaaagctcgacaggcgttt
cagcgggctttgcagttagatccagaaaatgttgaggctcttgttgcacttgcagttatg
gatctgcaagcaaatgaagctgctggaataaggaaaggaatggagaaaatgcaaagagcc
tttgagatatacccctactgtgcaatggctctgaattatctggctaatcactttttcttc
actggtcagcatttcctagtcgagcaactgactgaaacagctcttgcagtaaccaaccat
ggaccaacaaagtcacattcttactacaatttagcacgatcttaccacagcaagggggat
tatgagaaagctgggctctactatatggcatcggtcaaagaaatcaataagccccatgaa
tttatatttccttattatggtttaggacaagtacaactgaagctgggagatttcagaagt
gcactcaccaactttgaaaaggttttggagatttaccctgataattgtgagacattgaaa
gcacttggacacatttacgttcagcttgggcagattgagaaggcccaggaacttttgagg
aaggctgcaaagattgatccacgtgatgctcaggcatttattgatttgggggaactgtta
atttcttctgacactggtgctgctcttgatgcctttaaaacagcacgtactcttttgaag
aaggcaggtgaagaagttccaatagaagttctcaacaatattggagttatacattttgaa
aagggagagtttgagtcagctcatcaaagtttcaaggatgctctaggtgatggcatatgg
cttactttgctcgacagcaaaacaaaaaccaatgttattgatgctagtgcatccatgctt
caattcaaggatatgcagttatttcatcgatttgaaaacgatggtaatcatgtggaacta
ccatggaataaggtcactgtgttatttaacctggccagattactcgagcagatacatgac
acagtagctgcaagcgtattgtaccgcttgatcttgtttaagcatcaagactacgtagat
gcttatctaaggcttgctgctattgcaaaagcgaggaacaatcttcaactgagcattgaa
ctggtcaatgaggctctgaaggtgaatggcaagtacccgaatgcattatctatgcttggt
gacttggagcttaaaaatgatgactgggtcaaggcaaaagaaacattccgagctgccagt
gatgcaactgatgggaaggattcttatgctactctctctctgggaaactggaactacttc
gccgcccttcgtaacgaaaagagagccccaaagttggaagcaacccatttggaaaaagcg
aaggaactctacacgagagttattgtccagcatacatctaatctctatgctgccaatggt
gctggagtggtcttggcagaaaaaggccagtttgatgtttcaaaagatctttttacgcag
gttcaagaagctgcaagtggaagtgtctttgtccagatgccagatgtgtggataaatttg
gcgcatgtttattttgctcaaggaaattttgctttggctatgaaaatgtatcaaaattgc
ttgaggaaattttattataatacggacgcccaaattcttctctatttggcccgaactcat
tatgaagctgaacagtggcaagactgcaagaaatcattgctgagagcgatccacttggct
ccctcaaattacacattaagatttgatgcaggtgttgctatgcagaagttttcggcatcc
acactacaaaagacaagaaggacagctgatgaggtgcgttcaacagttgcagagttagag
aatgctgttcgtgtatttagtcatttgtctgctgcttccaaccttcatcttcatgggttt
gatgagaagaaaattaacactcatgttgaatattgcaagcacttgcttgatgctgcaaaa
attcaccgcgaagcagcggagcgcgaggagcagcagaaccgtcagagacaagaagctgct
cgtcaggctgcattggctgaggaagcccgtcgtaaagctgaagaacagaagaaatatctg
ttggagaaaagaaaactggaggatgagcaaaaacggttaagacaacaggaggaacatttt
cagcgtgtaaaggagcaatggaggagtagcacacccgcatctaaacgtcgggaaaggtct
gaaaatgatgatgatgaggttggacatagtgagaagagaaggagaaaaggtggaaagagg
agaaagaaggacaagagctcaaggtcgcattatgagacggagtatgcagaagctgacatg
atggattatcgggaagaaccagaagatgaagatgctagcatgaattatagggagcccata
ggtcaaatgaatgatcaggatgacgatgtggaagaaaatgccaatgatcgtcttgcagca
gctggacttgaagattctgatgttgatgatgagatggcaccttcaataactgcagctcga
cgaaggcgagcattgtcggaatctgatgatgatgagccattcgagaggcagctgagggat
aatactgatgaactgcaggatagtgatggagaactcagagagaatgatcataaatcgaat
ggaggtgctgctttggatgatgattag

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