Citrus sinensis (Valencia orange): 102613246
Help
Entry
102613246 CDS
T02983
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cit
Citrus sinensis (Valencia orange)
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102613246
03041 Spliceosome [BR:
cit03041
]
102613246
03036 Chromosome and associated proteins [BR:
cit03036
]
102613246
Enzymes [BR:
cit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102613246
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102613246
mRNA cycle factors
Common to processing body (P body) and stress granule
102613246
Spliceosome [BR:
cit03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102613246
Chromosome and associated proteins [BR:
cit03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
102613246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
102613246
NCBI-ProteinID:
XP_006492811
LinkDB
All DBs
Position
6:complement(join(19729601..19730107,19730471..19730584,19730805..19730972,19731428..19731670,19732213..19732296,19732398..19733102))
Genome browser
AA seq
606 aa
AA seq
DB search
MSTSWADSVSASENAAPASFNTNSLPRSTYVPPHLRNKQPASFEPPAPSREAYEPASGPR
WGGGSRPDFGRGQGYGSGGRTGGGWNNRSGGWDRRVREVNPFGDDIDAEQPFAEAENTGI
NFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGR
DLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA
KKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRFLAL
DEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPKEIQKLASDFLANYVFLAVG
RVGSSTDLIVQRVEYVHESDKRSHLMDLLHAQVANGVHGKQSLTLVFVETKKGADALEHW
LYMNGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPN
DIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRANY
GGGKNKRSGGNRFGGRDFRRDGSFTRGTSNDFYSGVNSSSNAYGVPGGGYGGGYGYSNPG
VTSAWD
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatcatgggctgattcagtctctgcatctgagaatgcagcccctgcttctttt
aacaccaattcattacctcgatccacttatgttccgccgcatctccgtaacaagcaaccg
gcctcctttgaacctcctgctccatcacgggaagcttatgaacctgctagtgggccccgc
tggggcggtggttcaaggcctgattttgggcgtggtcagggttatggttctggtggtaga
actggcggtggttggaataatagaagtggggggtgggaccgaagagtacgtgaagtgaac
ccgtttggtgatgacattgatgcagagcagccgtttgctgaagcagaaaacacgggtatc
aattttgatgcttatgaggatattccggtggagacgagtggggaaaatgtgccaccacca
gttaatacatttgcagaaatagatctgggggaagaattgaatcttaatattagaaggtgc
aagtacgtcaaacccactccagttcagcgtcatgcaattcctatatcggttgctggacga
gatttaatggcctgtgctcagacagggtcggggaagacagctgccttttgttttccaatt
attagtgggataatgcgtgagcagtatgtacagagaccacgtggagcacggactgtttat
cctctggctcttattctcgcccctacgagagaactctcatctcagatacatgatgaagcc
aagaagttctcctatcaaactggtgtcaaggtggtggttgcttacggaggagcaccaatc
aaccaacagttgcgagagcttgaaagaggtgttgatattcttgtggctactccaggaaga
ttggttgatctacttgagagagctagagtttcattgcagatgattagatttttagctctt
gatgaggcagatcggatgctggatatgggttttgagcctcaaatcagaaaaatagtgcaa
caaatggatatgcctccgcctggtgtgagacagacgatgcttttcagtgccacgttcccg
aaagagatacagaaactggcgtctgattttctagcaaattatgttttcctggctgttgga
agggttggttcaagcactgatttaattgttcaaagggttgaatacgttcatgagtcagac
aagagaagccatctgatggacctcttgcacgcacaggtggcaaatggagttcacggcaag
caatctttgacattagtttttgtggagacaaagaaaggtgctgatgcgttggaacactgg
ttgtatatgaatgggtttcctgcaactactattcatggggacagaacacaacaggaaagg
gaactagcattgagatcatttaagagtggaaagacaccaattttagtagctactgatgtg
gcggcacgtggtcttgatataccgcatgtggctcatgtagtcaactttgatctccctaat
gacattgatgattatgtacatcggataggaaggacaggacgagctgggaaatcaggattg
gctacagccttttttaacgagaacaatttgtcattggcaaggcctctagctgagctaatg
caagaatctaatcaggaagtacctgcttggcttactcgttacgcatcacgggctaattat
ggcggtggcaaaaataagcgatctggaggaaaccgttttggtggtcgtgacttcagaaga
gatggctcatttactagaggcacatctaatgacttttacagtggagtgaatagtagtagc
aatgcatatggggttccaggtggtggatatggtgggggatatggttatagcaatcctggt
gtgaccagtgcatgggattaa
DBGET
integrated database retrieval system
