KEGG   Citrus sinensis (Valencia orange): 102613279
Entry
102613279         CDS       T02983                                 
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102613279
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102613279
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102613279
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     102613279
SSDB
Motif
Pfam: Not3 NOT2_3_5_C DUF5965 DUF4407
Other DBs
NCBI-GeneID: 102613279
NCBI-ProteinID: XP_006479084
LinkDB
Position
3:join(40538568..40538660,40539277..40539408,40540354..40540491,40541005..40541055,40541618..40541707,40541795..40541941,40542215..40542325,40543565..40543621,40544336..40545061,40546577..40546735,40547913..40548078,40548548..40548693,40549343..40549621,40549721..40549855,40549962..40550143,40550348..40550414)
AA seq 892 aa
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNLVSELESQIDSFEAELEGLTVKKGKTRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDLLEDYVERNQDDFEEFSDVDELYHLLPLDKVES
LEDLVTIGPPGLVKGAPALSLKASLAASASQMPATVISTHQQVTSVQEQGEDTASQDSNS
DVAARTPPAKSSGVGSTASTPAVGPATPLSINVPAQTLSNASNTSPVLPGSSSVRGVFDN
TGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGLSSQPSSSIPLSSATAV
PSNGNIGAVPLASDVAKRNILGADERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSID
SNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFLQRLQQVQ
QQGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQ
QQPNPIHQQSSQQTLMSGGQKDADVSHLKVEEPQQPQNLPEESTPESASSPGLGKNLIHE
DDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAI
GDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQA
PIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRH
EEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
NT seq 2679 nt   +upstreamnt  +downstreamnt
atgggcgccagtcgaaagcttcaaggcgagatcgatcgagtgttgaagaaagtgcaagaa
ggcgtcgacgtcttcgatagcatctggaacaaggtttatgatacagacaatgcgaaccag
aaggagaagtttgaggctgacttgaagaaggaaatcaagaagctgcagaggtaccgagac
cagatcaagacatggattcagtcaagtgagatcaaggacaagaaggtcagtgcctcttat
gagcaggctctggtggatgctcggaagcttattgagcgtgaaatggaaagatttaagata
tgtgaaaaggagactaagacaaaagcattttctaaagaaggattgggacaacaacccaaa
actgatccaaaggagaaggccaaatcagagacgagggattggctgaacaacttggtttca
gagttggaatcccagattgatagttttgaagcagagctggaagggctaactgtgaagaaa
ggaaagacaaggccaccgagattgacgcatttagagacttcgattactcggcacaaggct
cacattatgaagttggagttgatcttgaggctactagacaatgatgaattgagtcctgag
caagtcaatgatgtcaaagacttattggaagattatgtggaacgtaatcaggatgatttt
gaagaatttagtgatgttgatgagctttaccacttattacccctggacaaggtggaatct
cttgaagatttggttacaattggtcctcctggtcttgtcaagggtgcaccggctcttagc
ttgaaggcttcgttggcagcatcagcatctcaaatgcctgctaccgtcatttccacgcat
cagcaagttacctctgtccaggagcaaggcgaagatacagcttcccaggatagcaattca
gatgtagctgctagaactcccccagcaaaaagcagtggagttggttctactgcatcaaca
ccagctgttggtccggcaactcctctttcgatcaatgttccagcacagactttgtccaat
gcatcaaacacttcaccagtccttccaggttcaagttctgtaagaggtgtctttgataat
acaggtcccattagttcctcacctcctgtaaatctgacaagttctacaaaggaggaagat
gttggaaacttccctggtcgtagatcatctccatctctcacagatgtaagggtcatgggt
agaggtggtctctccagccaaccatcatctagcatccctcttagttctgccactgcagtt
ccaagcaatggtaacattggtgcagttcctttagcctcagatgtggcaaagagaaatatt
ttgggagctgatgagagacttgggagtagtggcatggtacagtctctggtttccccactt
agtaaccgaatgatcttgtctcaggctgccaaaggtaatgatggaaccggatcaattgat
tctaataatgctggagagactgtggctatggctggcagggtttttaccccttctatgggc
atgcagtggagaactggaaattcgttccaaaaccagaatgaaccggggcagtttcgtgga
agaactgaaattgcgcctgatcagagggagaagtttttgcaacgactccaacaagtgcag
caacaaggtcacagcaatcttcttggcatgcctcttggaggaaataagcaattttcttcc
caacagaacccacttttgcagcagtttaattctcaaggctcatccatctctgcacaagct
ggtctaggacttggggttcaggcaccaggtatgaattctgttacatctgccagcttgcaa
cagcagccaaatcctatccaccaacaatctagtcagcagacgttgatgtcaggtggccag
aaagatgctgatgttagccatttgaaagtagaggagccacagcaaccgcagaatttacct
gaggagtcaactccagaatctgcttctagtcctgggctcggcaagaatcttattcatgag
gacgatctgaaagctccgtatgcaattgattcttctacgggagtatctgcctctttgaca
gagcctgctcaagttgtcagggacaccgatctttctcctggacaacccttacaatccagt
cagccttccggtggcctcggtgttattggccggcgaagtgtttctgatcttggtgccatt
ggtgatagcctgagtggagcaactgtgagttccggcggcatgcatgatcagatgtacaat
atgcagatgcttgaatctgcattttataaacttccacagccaaaggattcagaacgcgcc
aggagctacattccaagacaccctgctgtaacacctcctagctatcctcaagtccaggca
cccattgtgagtaaccctgctttctgggaacgattgtctctggacagctacggtaccgat
acactgttctttgcattttactaccagcagaatacttaccaacaatatttggccgctaaa
gagctaaagaaacaatcttggagataccacagaaaatacaacacatggttccaacggcat
gaggagcctaaagttgccaatgatgaattcgaacagggaacttatgtgtactttgacttt
catatcgccaatgatgatctccaacatggatggtgtcaaaggatcaagaccgagttcact
tttgagtataactaccttgaagatgagcttattgtatag

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