KEGG   Citrus sinensis (Valencia orange): 102613630
Entry
102613630         CDS       T02983                                 
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
cit03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102613630
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102613630
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102613630
   03041 Spliceosome [BR:cit03041]
    102613630
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102613630
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     102613630
Spliceosome [BR:cit03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    102613630
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 102613630
NCBI-ProteinID: XP_006471593
UniProt: A0A067EPS5
LinkDB
Position
5:join(21479628..21479630,21479901..21479942,21480064..21480162,21480299..21480376,21480839..21480878,21481070..21481237,21481357..21481379)
AA seq 150 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGRGREDGASGRQTKGIGRGLDD
GGAKGVGGGRGRGGPGGKPGGSRGGGRSRG
NT seq 453 nt   +upstreamnt  +downstreamnt
atgcttcccctttctctacttaaaactgcacaaggccatccaatgttagtagaactgaaa
aatggggagacttacaatggacatttggtcaattgtgatacttggatgaacatccatctt
cgtgaagtcatctgtacatctaaggatggagatagattttggagaatgcctgaatgctat
attcgggggaacacaatcaagtatcttcgagttcctgatgaggtgattgataaagttcag
gaagaaaccaagagtcgatcagatcgtaagccacctggggttgggcgtggtagaggaaga
ggccgggaagatggtgccagtggaaggcaaacaaaaggcattgggcgtggtctggatgat
ggtggtgctaagggagtaggtggaggccgaggcaggggtgggcctggtggaaagcctggt
gggagcagaggtggagggcgaagtcgagggtag

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