KEGG   Citrus sinensis (Valencia orange): 102614451
Entry
102614451         CDS       T02983                                 
Name
(RefSeq) pre-mRNA-processing factor 39-1 isoform X2
  KO
K13217  pre-mRNA-processing factor 39
Organism
cit  Citrus sinensis (Valencia orange)
Brite
KEGG Orthology (KO) [BR:cit00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cit03041]
    102614451
Spliceosome [BR:cit03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    102614451
SSDB
Motif
Pfam: HAT_PRP39_N HAT_PRP39_C Suf TPR_14 HAT_Syf1_CNRKL1_N HAT_Syf1_CNRKL1_C TPR_19 NRDE-2 TPR_16 TPR_12 TPR_2 UTP6_C TPR_MalT TPR_10
Other DBs
NCBI-GeneID: 102614451
NCBI-ProteinID: XP_006479443
LinkDB
Position
3:complement(join(42333987..42334094,42334390..42334497,42335507..42335797,42336416..42336565,42336705..42336785,42337421..42337537,42337626..42337778,42338217..42338360,42338856..42339237,42339888..42340055,42340678..42340907,42341264..42341373,42342199..42342646))
AA seq 829 aa
MGDSETLVAETSVVMSYNSAGYTNAAYAEAGTNAGPDASAFASGTTGGYVAPGQSADAAY
SVPSVADGNAYNMDPNAVMQQAPGVGAPGSGDNVATSENEAMGSSQAAGYNSMNGNVVNE
AGNATSTENGTSLGIESGAAAGQELVDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEE
TEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS
VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAM
IYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANE
EEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHV
KPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDL
AHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHAN
MERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL
DHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVEKFLMSNSDSPSTANAAEREELSCVFL
EFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQ
SLMGAYPSSQNPWAAGYGVQPQTWPPATQAQAQQWNQQAAYGAYSAYGSSYPTPQTSVPQ
NAAYGAYPPAYPAQQTFPQQGYSQPSAAATVTPAQQPASVSQTYYGSYY
NT seq 2490 nt   +upstreamnt  +downstreamnt
atgggagacagtgaaacactagttgctgaaacatctgtggttatgagttataactctgcg
ggctatactaatgctgcctatgctgaggctggcacaaatgctggtcctgatgccagtgcc
tttgcctcagggactactggaggttatgttgctcctgggcaatcggcagatgcagcttat
tcagtacctagtgtagctgatggaaatgcatataatatggatcctaatgctgttatgcaa
caagccccaggtgttggggcccctggcagtggtgataatgttgctacttcagaaaatgaa
gccatggggtcatctcaagctgctggttataattctatgaatggtaatgttgtaaatgaa
gcaggaaatgccacatcaacagaaaatggaacctctttgggtattgaaagtggggctgct
gctggacaagagcttgtggatggttctgtgccagcaatgtcaggtgaagaagatcggcta
tggaacattgtgaaggccaattcttctgactttagtgcatggactgccctacttgaagag
acagagaagctggcacaggacaatatagtaaaaataagaagagtgtatgatgcttttctg
gctgaatttcctttgtgctatggttattggaagaagtatgctgatcacgaggcacgcgtg
ggctccatggacaaagttgtggaagtttacgaacgggcagttcaaggggtgacatattca
gtagacatttggttgcattactgcatatttgccataaacacatatggagatcctgaaacc
atccgaaggctttttgaacgagggttggcttatgttgggacagattacttgtcattccca
ctttgggacaaatacattgaatatgaatacatgcagcaggagtggagtcgcgttgcaatg
atttacactaggattttagagaatccgattcaacagttagatcggtatttcagcagtttc
aaggagtttgctgcaagtcgacctttatctgaattaaggactgctgaggaagtcgatgct
gctgctgttgctgttgcagcagcaccttcagagactggtgctgaagttaaagcaaatgag
gaagaggttcagcctgatgctactgaacaaacttctaaacctgttagtgctggcttaaca
gaagcggaggagttggagaagtatatcgctgtcagagaagagatgtataagaaagctaaa
gagtttgattctaagatcattggttttgaaacagctatcaggaggccatattttcatgtc
aagccactaagtgtcactgagcttgaaaactggcataactatctggactttatagaaaga
gatggtgatttcaacaaggtagttaagctatatgaaagatgtttgatagcatgtgccaat
tatcctgagtactggatacgatatgttttgtgcatggaagccagtggaagtatggatctt
gcgcataatgcacttgctcgtgcaactcatgtctttgtcaagaggctgccagagattcat
ctttttgctgcccgattcaaagagcagaatggggatatagatggcgctcgagctgcttat
caacttgtacatacagaaacttctcctggtcttcttgaagcaattattaagcatgccaac
atggaacgacggctggggaatcttgaagatgccttttcgttatatgaacaggccattgct
attgaaaaagggaaagagcattcacaaacattaccaatgttgtatgctcagtactctaga
tttttgcacctggtttctagaaatgcagagaaagcccggcaaattcttgttgactcgctt
gaccatgttcagctgtcaaaaccacttctagaggccttgattcatttcgagtctattcag
tcttcaccaaagcaaattgattttctggagcaattggttgagaagttccttatgtcaaat
tcagatagccccagcactgcaaatgcagctgagagggaagagctgtcttgcgtttttcta
gagtttttgggtctctttggggatgcacagttgatcaagaaggctgaagataggcatgcc
agacttttcttacctcatagaagcacatcagaactaaggaaacgtcatgcagaggatttt
ttagcctcagagagggctaagatggccaaatcttattctggcgctccttcaccagcccaa
tcattgatgggtgcttatccaagttcacaaaacccttgggcagctggctatggcgttcag
ccacaaacttggccaccggcgacacaggcacaggcacaacaatggaatcaacaggccgcg
tatggtgcatatagtgcttatggcagcagttatcctactccacaaacatcagtaccacag
aatgctgcttatggtgcttatcctcctgcatatcccgcccagcagacctttcctcaacaa
ggttactcgcaacctagtgcagcggcaacagtaaccccagctcagcaacctgcctcagtc
tcgcagacttattatggaagttattattga

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