Citrus sinensis (Valencia orange): 102614658
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Entry
102614658 CDS
T02983
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102614658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cit03041
]
102614658
Spliceosome [BR:
cit03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
102614658
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
102614658
NCBI-ProteinID:
XP_006485995
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All DBs
Position
4:join(3326775..3327449,3327672..3327959,3328049..3328429,3328530..3328724,3328813..3328973,3329736..3330612)
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AA seq
858 aa
AA seq
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MRYSNHSFSPQLFLCDALSISNRKPLETKTLAMDKDKSSKRSHDHHRDRDGEHRHRHRDR
DDKHRDHHHHRSSDHKSSRRDERERSRDREKSIDERDFKREKSHDDRERDRDFKREKSHE
ERDSRRDRDRSREVKREEFDDGDDVASEVKKKRKARDESEERGEKKNARVLDEKREKKRR
FEDNFVKEEEDDGGISGNANVSEIYLKQEVNGHDSTNAGGSANSNGAAVESITMASRTSP
DTTMAAGHPPFPTKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSAAGKSGSLSLDALA
KAKKALQMQKELSEKLKKIPTLSKGSSSDGSGKVQGPAATASDAAAAAAAASVQPPTSSV
PAFPGLANITNIEAVKRAQELAAKMGFRQDPEFAPIINCFPGQPPVDAAVPQKPTKAPVL
RVDALGREIDEHGNVVNRTKPSNLSTLKVNINKQKKDAFQILKPELEVDPNVNPHFDPRM
GINKSKLLRPKRMTFQFVEEGKWSKEAEILRVKSQFGEAGAKERQAKQAQLAKAKGGTDI
NPNLIEVAERVITKEKPKDPIPEIEWWDAPLLLTGSYADISDDVTIEDKLKREKITIYVE
HPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMS
NLMKVLGSEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAERREKKERKLFDDPSS
VETIVSVYKINDLSHPKTRFKVDVNAHENRLTGCAVICEGINVVVVEGGSKSIKRYGKLM
LRRIDWAKAVKEEDEDEDETTDKPVNKCVLVWQGNVARPSFNRFFVHECMTEAAAKKVFA
DAGVAHYWDLAVNFNDEI
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgcgatattccaatcattcattctcgcctcaactatttctgtgtgacgcactctctatc
tcgaataggaaacctctggagacaaaaaccctagccatggataaagacaaatcctccaaa
cgctcacatgaccaccaccgtgaccgtgatggagaacacaggcatcgacacagagacaga
gacgataaacaccgtgaccatcaccaccaccgatcgtcggatcacaaatcttctaggcgc
gacgaacgagagagatcccgcgaccgcgagaaatcgatcgacgaacgagatttcaagcgc
gagaagtcgcacgacgatcgcgagcgtgaccgagattttaagcgcgaaaaatcccacgaa
gagcgcgattccaggcgcgaccgagatagatctcgcgaagtgaagcgcgaggaatttgac
gatggtgatgacgtggcgagcgaggttaagaagaagaggaaagcgagggacgagagtgag
gagagaggagagaagaagaatgctagggttttggatgagaagagggagaagaagagaagg
ttcgaggacaatttcgtaaaagaagaagaggatgacgggggtatttccggtaatgccaat
gtttctgagatttatttgaagcaagaagtcaatggccatgattctaccaatgccggcggc
tctgcaaattctaatggtgccgctgttgaatcaattactatggcatcgaggacttcgcct
gatactactatggctgccggtcatcctccctttcctactaaggtatcttcaatttctacc
acaaatgaaaataagggagttagtattaccaggtctcatgaggttcatggaaaatctagt
acagatgggacatcttcagctgctgggaaaagtggaagtctatcactagatgctttagca
aaagctaagaaagctttacaaatgcagaaggaattgtcagaaaaattgaagaagatacca
acgttgagcaaggggtcaagttcagatggtagtggaaaagttcagggaccggcagctact
gcttctgatgcggctgcggctgcggcagcagcttctgttcagccacctacaagttcagtg
cctgcttttcccggccttgctaatattaccaatattgaagctgttaaaagggctcaggaa
cttgctgctaagatgggatttcgtcaggaccctgaatttgctcctattataaactgtttt
cctggacagccgccggtggatgctgccgtgcctcagaagcctaccaaggctcctgttctt
cgtgtggatgcacttggtagggaaatagatgagcatggaaatgtagtgaacaggactaaa
ccaagcaacctaagtactctgaaggtcaacatcaacaagcaaaagaaagatgcatttcag
attcttaaacctgagctggaagtggatccaaatgtgaatcctcattttgacccaaggatg
ggtataaataaaagtaagcttttgagacccaaacggatgactttccagtttgtagaggaa
ggaaaatggtcaaaagaggctgagatacttagggtcaagagtcaatttggagaagcggga
gcaaaagagcgacaggcaaagcaagcacagttagctaaagctaaaggagggactgatata
aatccgaatttgatagaggtagccgaaagagtcattaccaaggaaaaacctaaggaccca
attcctgaaatagagtggtgggatgcacctttgttgcttactggttcttatgctgacata
tctgatgatgttacaattgaagataaattaaagagggagaagatcactatctatgttgaa
catccccgtcctattgagcctcctgctgagccagctccccctccacctcaaccgctaaag
ctaaccaagaaagagcagaagaaactccgtacacagaggcgtctggccagggaaaaagat
agacaggagatgataagacaaggcctgattgaacctcctaaacctaaagtaaaaatgagc
aatttgatgaaggtccttggctctgaagcaacccaggatcccacaagactggaaaaagag
attcgtagcgctgctgctgagcgtgaacaagctcatattgacaggaatattgctcgcaag
ctcactcctgcggagcgccgagagaaaaaagaaagaaagttatttgatgaccctagttca
gtggagacaattgtttcagtttacaagatcaatgacctttcccacccgaagacccgcttt
aaagtggatgtcaatgcccatgagaaccgtttaactggatgtgctgtgatatgtgaggga
attaatgttgtggttgttgaaggtggaagcaaatccattaagagatatgggaagcttatg
cttaggcgcatagactgggctaaagctgtaaaagaagaggatgaagatgaagatgagact
actgataaacctgtcaacaagtgtgtgctggtgtggcagggtaatgtcgcaagaccgagt
tttaacaggttttttgtgcatgagtgcatgactgaagctgctgccaagaaggtttttgct
gatgccggcgttgcacattactgggatctcgctgtcaacttcaatgatgaaatttaa
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