KEGG   Citrus sinensis (Valencia orange): 102614709
Entry
102614709         CDS       T02983                                 
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
  KO
K12600  superkiller protein 3
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102614709
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102614709
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     102614709
SSDB
Motif
Pfam: TPR_2 TPR_1 TPR_11 TPR_17 TPR_8 TPR_14 TPR_16 TPR_12 TPR_19 TPR_9 TPR_7 TPR_20 BTAD TPR_P4H DUF6584
Other DBs
NCBI-GeneID: 102614709
NCBI-ProteinID: XP_006494434
LinkDB
Position
5:join(38850891..38850905,38851024..38851107,38851215..38851415,38851506..38851712,38851804..38851854,38851933..38852025,38852677..38852817,38852883..38852963,38853351..38853598,38853679..38853850,38854813..38854928,38855024..38855081,38855411..38855476,38855613..38855825,38855972..38856023,38856457..38856830,38856930..38857024,38857418..38857660,38858022..38858665,38859057..38859260,38859966..38860144)
AA seq 1178 aa
MNNKTDDEKGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQ
NAVAFRYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVC
REASDKSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGM
FSAAIKSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLA
SGLLGLAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPW
AEERQSLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLI
YSLNEAYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDV
SLADAWAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFES
CLRAVQILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEAR
SDYQAAVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQG
MLDAEVLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLD
STINSILKMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVA
LNKLVKNGPESCLGFNSGIFHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSHVASRCCS
LETSDCIKKEGPKSAWEILGAEGVACNVIGSVDLKFSFPTCIYEHLTGPKAVQELQKCLH
REPWNYNVRYLLVLNLLQKAREERFPRHLCTILQRLIHVALSCEFYSIQHTSYQYQKFQL
LLCASEISLQGGNITGCINHAKSASALLLPDAYRFFGHLLLSRAYAAEGNMLNLQDEYVR
CLELKTDYVIGWMCLKVVESLYEVQADTNTIELSFNECLKQGNNSRLIWTAKFNLVLGFV
FLWKKDFFSAEKCLAQACSLAGAESCLFLCHGTICMEIARQYHDSHFLSLAVRSLTKAQK
TSFVQLPVVSLLLAQAEGSLSSIEKWEKNLRLEWFTWPPEMRPAELFFQMHLLAMLSKAG
SDSSSRVEFCQSPQKWVLRAIHTNPSCLRYWKVLHKLF
NT seq 3537 nt   +upstreamnt  +downstreamnt
atgaataataaaacggatgacgaaaagggagcacttttattgcaactggaggattcctta
gaagccaatcctgatgacccctccctccatttggatctcggcttgcacttgtgggagaac
tcagaatcgaaggaaaaagcagctgaacattttgtaatagcagccaaattgaaccctcaa
aatgcagttgctttccgatatttggggcattattacaccagattttctattgatacccaa
agagctatcaagtgttaccaaagagctgtctctctcagtcccgatgattctgtttctggg
gaagctttatgtgaattgttggagcatggaggaaaggagagcttggaagttgtcgtgtgt
agggaggcctcagacaagtctccaagggctttctgggcatttcgtcgcctgggttatctg
caattgcatcacaagaaatggtcagaagctgtccagagtcttcagcatgccatacgaggc
tatccaacctctcctcatctctgggaagctcttggtcttgcttaccaccggcttggcatg
tttagtgctgctattaagtcctatgggcgagccattgaattggatgatacaagtatcttt
cctctgcttgaaagtggaaacatctttttgatgcttggtaatttcagaaagggagttgag
cagtttcagctagctctcaagatttcatctgaaaatgtgtctgcacactatgggcttgct
tctggtttgcttggtttagcaaaacaatgcattaatttgggtgcatttagatggggagct
tcactgctggaggatgcatgcaaagttgccgaagctaatactcgattagctggaaatatg
tcatgtatatggaagttgcatggtgatattcagcttacatatgcaaaatgtttcccatgg
gcggaggagagacagagtttagaatttgatgtggaaactttcagtgcttccattgtttcc
tggaagacgacttgccttatggctgccatatcttctaaaagttcttaccaacgagctttg
tacttggccccgtggcaagctaacatctatactgatattgcaataacttcagatctcatt
tactctttaaatgaagcttatggacattaccaaagtgcttggcatgtgtctgagaagatg
gctttgggggccttgttacttgagggtgacaactgccaattttgggtgacattggggtgt
ttatctaactataatggattaaaacagcatgctttaatcaggggattgcagctggatgta
tctttagctgatgcttgggcacacattgggaagctatatggagaagtgggtgagaagaag
ttagcaaggcaagcatttgattcagccagaagtatagatccttcacttgcattaccatgg
gctggcatgtcagctgatgttcaagctagcgaatccttagtggatgatgcttttgagagc
tgtttacgagctgtgcagatattacctcttgctgagttccaaattggtctagctaagctt
gctaaactgtcagggcacctttcatcttcacaggtttttggagccatccagcaggcaata
caacgtggtcctcattatcctgaatcccataacttgtatgggttagtttgtgaggcacgg
tctgactatcaagctgccgttgtttcttataggctagcacgctatgcaattagctcttct
tcaggcactgttccaaattcccatttccaagatatatccattaacttggccagatcactt
agtagggcagggaacgcattggatgctgtacgagaatgtgaaagtttggaaagacaaggc
atgcttgatgcggaagtattgcaagtatatgccttctctctgtggcaacttggtaaatat
gacctggccctttccatggctagaaatctggcttcaagtgtgtctgccatggaacaatca
tctgcagctgcgtctgttagttttatctgccgattgctttaccacatctctggactcgat
tcaacaattaatagcattctgaaaatgccaaaggggctgtttcagtgttcaaaaatgagc
ttcatagtgtctgccatccatgctcttgatcatagtaatcgccttgaatctgttgtttca
agcagtcgaaactgtattgcatctcctgaagaaatcactggaatgcactatttagtagca
cttaataaattggttaaaaatggacctgaatcctgccttggatttaatagtggaatattc
cacctcagaaaagttcttcatgtttaccctaattgtaatctgataaggaacttacttggt
tatctcttgctatcaagtgacgaatggagatattcacatgttgcaagtaggtgctgcagc
ctagagacatcggactgtataaaaaaggaaggtccaaagtcagcatgggagatccttggt
gctgaaggggttgcttgcaatgtcataggcagtgttgatcttaagttttcttttccaacc
tgtatttatgagcatttgactggacctaaagctgttcaagagttgcagaaatgcttgcat
cgagaaccatggaactataacgtgcggtatttgcttgtacttaatcttttacaaaaggca
cgcgaagagagatttcctcggcatctctgtaccatacttcaacggctaattcatgtcgct
ctttcctgtgaattctattctatacaacatacatcttatcaataccaaaagtttcagctt
cttctctgcgcttctgagatcagtttgcaaggtggaaatattactgggtgtatcaaccat
gcaaaaagtgcttcagccctcttacttcctgatgcctaccgattttttggacacttgcta
ctatcccgtgcctatgctgcagaaggtaatatgttaaaccttcaggatgaatatgtaaga
tgtttagaactcaagacagattatgtaattggctggatgtgtctcaaagtcgtggaatct
ctatatgaagtgcaagctgacacaaataccatagagttgagcttcaacgaatgcttaaaa
caggggaataattccaggctgatttggactgctaaatttaatttggtgttgggttttgtt
ttcctatggaagaaggattttttttctgccgagaagtgtcttgcacaagcttgttcgttg
gcgggtgctgagagctgcctttttctgtgtcatggtaccatctgcatggagattgcaagg
cagtatcacgattctcattttttgtcactagcagtaagaagtcttaccaaagcccaaaaa
acttccttcgttcagttgcctgtggtctcactattactggctcaagcggaaggaagccta
tcttctatagaaaaatgggagaaaaaccttcgtctggaatggtttacttggccaccagaa
atgaggcctgcagagctttttttccaaatgcatttgcttgcaatgttgtcgaaagctggg
tctgactcttcctcaagagttgagttctgtcagagcccacagaaatgggttcttcgggca
atccatacaaacccttcttgtttaagatattggaaggttctgcataagcttttctaa

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