Citrus sinensis (Valencia orange): 102614741
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Entry
102614741 CDS
T02983
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102614741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102614741
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102614741
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102614741
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNase_H_2
DEDDh_C
Motif
Other DBs
NCBI-GeneID:
102614741
NCBI-ProteinID:
XP_006481554
UniProt:
A0A067FTA8
LinkDB
All DBs
Position
6:complement(20595534..20596376)
Genome browser
AA seq
280 aa
AA seq
DB search
MSDVPPPQPPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRH
RDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHA
LDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCL
TQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQA
GSDSLLTLHAFLKIKDKHFGNEYELQKYANVLHGLELLEC
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgtaccgccgccgcagcctccgaagcctcggatcttgatccgagaggtattt
gagtttaacttgatctccgagttcgaaaggatcagagctttaattgacagatatccgata
atctcaatggacacggagttccctggcgtcgtggtccgacccgattcgaacatccgtcac
cgtgacccggctgcgaattacaatggactcaaggcaaatgtggatctgttaaatctgatc
caaataggtttaaccttatcggacgaggaagggaatcttccggacctcgggtcgggttct
acgtattatatttgggagttcaattttaaggacttcgatatcgcgcgtcacgcccacgct
ctcgattcggttgagctgttgaaacgacaaggtattgattttgaaaagaatcgtgaattt
ggaatcgactcggtaagatttgctgaattgttgatgtcgtcagggcttgtattaaacaag
gacgttacatgggtgaccttccacagcgcctatgatttcgggtatttggttaaatgcttg
acacagcgggtcttgcctgagaaattgagtgagtttgtgactcgagtgggcgtgtttttt
ggggagaaagtatatgatgtgaagcatttgattaggttttgtacgtgcttatatggggga
ttggatcgggtttgcaaggcattgggtgtggagcgggtcgttgggaagagccaccaagcc
ggatcggatagcctgctgacattgcatgcgttcttgaagattaaagataagcattttgga
aacgagtatgagctccaaaagtacgctaatgtcttgcatggtttagaactgcttgaatgt
tga
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