KEGG   Citrus sinensis (Valencia orange): 102614817
Entry
102614817         CDS       T02983                                 
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03420  Nucleotide excision repair
cit04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    102614817
  09124 Replication and repair
   03420 Nucleotide excision repair
    102614817
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cit04121]
    102614817
   03400 DNA repair and recombination proteins [BR:cit03400]
    102614817
Ubiquitin system [BR:cit04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     102614817
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      102614817
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 NBCH_WD40 WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_EML Beta-prop_TEP1_C ANAPC4_WD40 WD_LRWD1 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_WDR75_1st Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_RIG_1st Beta-prop_WDR19_1st Beta-prop_VPS8
Other DBs
NCBI-GeneID: 102614817
NCBI-ProteinID: XP_006473337
LinkDB
Position
5:join(35875739..35875888,35876084..35876344,35876444..35876603,35876742..35876908,35877468..35877711,35878005..35878159,35878272..35878361,35879477..35879548,35879636..35879677)
AA seq 446 aa
MWKEIGGREAGQIRPNSFANRVKSHRLSTLQLSNYKEIVSPHKGSINSLQVDLTEERYLL
SGASDSSVAVYDVQRATDYEGGGHIAKHRSVFVVDKQHEHGHKYAISSAIWYPVDTGLFV
TGSYDHYVKVWDTNCTRVVMNFKMPGKVYRTAMSPLAASHMLIAAGTEDVQVRLCDIASG
AISQTLSGHRDGIMTVEWSTSSEWILVTGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP
PLLKRKVSISKSLSAGQNSSVKPRAPQKKSANGNGVRQSSVGRIPAKGSVRQRLHPGMLS
SQDRATAHYGAVTGLKVTENGMYLLSAGSDSRIRLWDVESGRNTLVNFETVRLQTSKPIQ
LATTQDPAVVFVPCMTAVKAFDIWSGKTCLTFRGHYEYVNCCCFSSQDQELYTGGNDRQI
LVWCPSRHISDGVDAGPMQDQDNWSD
NT seq 1341 nt   +upstreamnt  +downstreamnt
atgtggaaggaaatcggaggcagagaagcgggtcaaatccgcccaaattctttcgcgaat
cgggttaaatcccatcgactttccactctacaactctccaattacaaagagatagtttct
cctcataaaggctctatcaattctctccaggttgatttgacagaggaacggtatttgttg
tccggtgcatcagattcatccgtagctgtttatgatgttcaacgggccactgattatgaa
ggtggtggccatattgctaagcacaggagtgtgtttgtggttgacaagcagcatgaacat
ggtcacaagtatgccatatcctcagccatttggtatcctgttgacacgggactttttgta
acgggatcatatgatcattatgtaaaagtttgggataccaattgcactcgggtagtaatg
aacttcaaaatgcctggaaaggtttatagaactgccatgtctccattggcagcatcccat
atgctaattgctgctggaacagaagacgttcaagtccgcctttgtgatattgcttctggg
gcaatctctcagacactatctggtcatcgtgatggcataatgacggtagaatggtcaaca
tccagtgagtggattttggtaactgggggctgtgatggtgcaatacgtttctgggacatc
agacgtgctggatgttttcgcgttttggatcagtcccagagtcagcttgggagacgacca
cctctcctaaagcgtaaggtttcaatctcgaagtccttgtctgcagggcaaaattcgtct
gtaaaaccaagggcaccacaaaaaaagtctgctaatggaaatggtgtgagacagtcatct
gttggtcgtatccctgccaagggatctgtgagacagagattgcacccagggatgttgtcc
agtcaggatcgtgccactgctcattatggtgctgttactggtttgaaagtaacagaaaat
ggaatgtatcttctaagtgcaggctcggattctagaataaggctgtgggacgttgaatct
ggccgcaatacacttgtgaactttgaaactgttcgcctgcaaaccagtaagccaattcaa
ttagcaacaacacaagatccagctgttgtttttgttccatgcatgactgctgtgaaagca
tttgatatctggtcaggcaagacatgcctgacatttcgtggccactacgaatacgtcaat
tgttgttgttttagctcacaggatcaggaactatacacaggtggcaatgatcgacaaatt
cttgtctggtgtccatccaggcatatttctgatggagtggatgcaggacccatgcaggat
caggacaactggagtgattga

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