KEGG   Citrus sinensis (Valencia orange): 102615782
Entry
102615782         CDS       T02983                                 
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1 isoform X1
  KO
K15172  transcription elongation factor SPT5
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    102615782
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cit03021]
    102615782
   03019 Messenger RNA biogenesis [BR:cit03019]
    102615782
Transcription machinery [BR:cit03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     102615782
  RNA polymerase I system
     102615782
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     102615782
SSDB
Motif
Pfam: KOW1_SPT5 KOW4_SPT5 KOW Spt5-NGN KOW6_SPT51-2 KOW2_Spt5 KOW7_SPT5 KOW5_SPT5 KOWx_SPT5 Spt5_N GPKOW_C DUF4438 ProQ_C
Other DBs
NCBI-GeneID: 102615782
NCBI-ProteinID: XP_006472914
LinkDB
Position
5:join(33911224..33911554,33913041..33913279,33913430..33913576,33913677..33913835,33913916..33913999,33914256..33914326,33914419..33914776,33914897..33915052,33915190..33915287,33915372..33915420,33915494..33915646,33915731..33915874,33915989..33916076,33916193..33916354,33916446..33916494,33916573..33916667,33916787..33916865,33917484..33917538,33917640..33917757,33917864..33918007,33918512..33918606,33918827..33919072)
AA seq 1039 aa
MPRRRDDDDDEMDAEEDEYDEQVMDDEIDEEEEEEDDRSSRKRRRSQFIDDVAEEDDEEE
EEDYDDDEDYGGGGGAARKPKAKRRSGSEFFDLEAQVDSDEEEDEEEGEDDFIVDGGAEL
PDEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQALLPSVR
DPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSAIALDHLKNYIYIEADKEAHVKEA
CKGLRNIYSQKVMLVPIREMTDVLAVESKAIDLSRDTWVRMKIGNYKGDLAKVVDVDNVR
QRVTVKLIPRIDLQALANKLEGREVAKKKPFVPPPRFMNVDEARELHIRVERRRDPMTGD
YFENIGGMLFKDGFLYKTVSMKSISAQNIQPTFDELEKFRTPGENGESDIASLSTLFANR
KKGHFMKGDAVIVIKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTLAVNSKELCKYFEPG
NHVKVVSGTQAGATGMVLKVEQHVLIILSDTTKEDIRVFADDVVESSEVTTGITKIGDYE
LRDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLEKKSNVQDRNKNT
VAVKDVVRIVEGPCKGKQGPVEHIYRGILFIHDRHHLEHAGFICAKSSSCVVVGGSRANG
DRNGDAYSRFNSLRTPPRIPQSPGRYSRGGPPAGGRNRGGRGGHDALVGTTVKVRLGPYK
GYRGRVVDVKGQSVRVELESQMKVVTVDRSMISDNVVVSTPYRDTPRYGMGSETPMHPSR
TPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQP
GSPPSRAYEAPTPGSGWASTPGGNYSDAGTPRDSSSTYVNAPSPYLPSTPGGQPMTPNSA
SYLPGTPGGQPMTPGTGGLDAMSPVIGADNEGPWFMPDILVRRSGEESVVGVIREVLPDG
SCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVD
VSLDVKILDMAILAKLAQP
NT seq 3120 nt   +upstreamnt  +downstreamnt
atgcctcgtcgacgggatgacgacgacgacgagatggacgcggaggaagacgagtacgac
gagcaagtcatggacgatgaaattgacgaagaagaagaggaagaagacgatcgctccagc
aggaagcggaggagatcgcagttcatagatgacgtggcagaggaggatgacgaagaggag
gaggaggattatgacgatgatgaggattatggaggtggtggcggcgctgccaggaagcct
aaggctaagaggaggtccggttcggagtttttcgatctggaggcgcaagtcgatagtgat
gaggaagaggatgaggaagaaggagaagacgacttcatagtagatggtggagctgagtta
cctgatgaagatggtggtagagggatccatcgccgcccacttcttcctcgggaggatgag
caagaagatgttgaagctcttgagagaaggattcaggcaagatatgcaaggtcaagtcac
acagaatatgatgaggaaaccacagatgtggagcagcaagctcttttgccatctgttaga
gatccaaagctctggatggttaagtgtgcgattggccgtgaacgagaggcagccgtctgt
ctaatgcaaaagtgcatagataaaggatctgaattgcagatcaggtctgctattgctctt
gatcatcttaaaaactacatctatattgaagcagacaaagaagcccatgtgaaggaggcg
tgcaagggtctgcgaaatatatattcacagaaagtaatgcttgttccaataagagaaatg
actgatgttcttgctgttgaaagcaaagcaattgatctttctagggatacatgggtcaga
atgaagattggtaattataagggagaccttgctaaggtagttgatgtggataatgtgcgg
cagagggttactgtgaaattaatccccaggatagatttacaggctcttgctaataaactg
gaaggtagagaagttgcgaagaaaaagccatttgtgccgcctccacgttttatgaatgtt
gatgaagctagggagttgcatatacgtgtagagcgtagacgagatccaatgactggtgat
tactttgagaatattggtggtatgttgttcaaagatggtttcttgtacaaaacagtttcg
atgaaatcaattagtgctcagaacatacaaccaacttttgatgaactcgaaaagttccgg
actcctggggagaatggagaaagtgatattgctagtctttcaacattatttgcgaacaga
aagaaagggcatttcatgaagggtgatgcagttattgttatcaagggagatctaaaaaat
ttgaaaggttgggttgagaaggttgatgaagagaatgttcatatcagaccagaaatgaaa
gggcttcctaaaacccttgccgtaaattcaaaagagctgtgcaaatattttgaaccaggg
aatcatgtgaaagttgtctcgggaacacaggcaggtgcaactggcatggttctaaaggtt
gagcaacatgttctcatcattctatctgacacaaccaaggaagatattcgtgtgtttgcc
gatgacgttgtggagagctctgaggttactactggtataaccaaaattggggactatgag
cttcgtgatcttgttctgctggataacaatagctttggggtgataatacgtgtggaaagt
gaagcttttcaggttctgaagggagttcctgatagacctgaggttgctcttgttaagttg
agagaaataaaatgcaagctcgagaagaagtctaatgtgcaagatagaaataagaatact
gttgcagtgaaagatgttgtgaggattgttgagggcccatgcaaaggtaaacaaggtcct
gtggaacacatatatagaggaattttattcatccatgatcgacatcatcttgagcatgct
ggctttatttgtgctaaatctagttcttgtgttgttgtgggaggatcacgtgccaatggg
gacagaaatggtgatgcctactcaagatttaatagtttaagaacaccacctcgtattccc
caatccccaggaagatattctagaggtggtcctccagccggaggaaggaatagaggtgga
agaggaggacatgatgctttggttgggactacggtgaaagttcgcctaggtccttacaag
ggctaccgcgggcgggtggtagatgttaaggggcaatcagttcgtgttgagctggagtca
caaatgaaggttgttacagttgatcgaagtatgatctctgacaatgtggttgtttcaaca
ccgtaccgtgatacacctcgttatggtatgggaagtgaaactcctatgcatccttctcga
actccactgcatccttatatgactccaatgagagatgctggggcaacacccattcatgat
ggcatgaggacacctatgcgtgatcgagcatggaatccttatacaccaatgagtccacct
agggataattgggaagatggaaaccctggctcctggggaaccagtccacaatatcagcca
ggaagtcctccttcacgtgcatatgaagcacctactcctggttcaggttgggctagtaca
ccgggtggcaattatagtgatgctggaacaccaagagatagcagttcgacttatgtcaat
gctccaagcccttatctgccatcaactccaggtgggcagccaatgacgccaaactcagca
tcctatcttcctggcactcctggggggcagcccatgacacctggaactggtggtctagat
gctatgtctcctgttataggagcggacaatgaaggaccatggttcatgccggacatcttg
gtacgtaggtccggagaggaatcggttgttggagtcatccgagaagtgcttccggatggg
tcatgtagggtggtccttggttcaagtgggaatggtgatacaataacggcgcttccaaat
gaaatagagatagtgccgccaaggaaaaccgacaagatcaagataatgggtggtccacat
cgcggtgcaacaggcaaattaattggtgtggatggtactgatggaattgtaaaagtagat
gtcagtcttgatgttaagatattagacatggctatacttgcaaaattagcacaaccatga

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