KEGG   Citrus sinensis (Valencia orange): 102616275
Entry
102616275         CDS       T02983                                 
Name
(RefSeq) replication factor C subunit 4 isoform X1
  KO
K10755  replication factor C subunit 2/4
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03030  DNA replication
cit03410  Base excision repair
cit03420  Nucleotide excision repair
cit03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102616275
   03410 Base excision repair
    102616275
   03420 Nucleotide excision repair
    102616275
   03430 Mismatch repair
    102616275
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cit03032]
    102616275
   03036 Chromosome and associated proteins [BR:cit03036]
    102616275
   03400 DNA repair and recombination proteins [BR:cit03400]
    102616275
DNA replication proteins [BR:cit03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    102616275
  DNA Replication Termination Factors
   ELG1-RFC complex
    102616275
Chromosome and associated proteins [BR:cit03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    102616275
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     102616275
  Check point factors
   HRAD17(Rad24)-RFC complex
    102616275
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 RuvB_N Mg_chelatase AAA_11 AAA_16 AAA_5 ResIII AAA_24 AAA_14 AAA_2 AAA_assoc_2 SLFN-g3_helicase nSTAND3 PhoH AAA_19 AAA_28 AAA_25 AAA_30 AAA_7 DNAX_ATPase_lid Parvo_NS1 RNA_helicase DUF815 IstB_IS21 NPHP3_N TIP49 bpMoxR
Other DBs
NCBI-GeneID: 102616275
NCBI-ProteinID: XP_006472822
LinkDB
Position
5:complement(join(33277111..33277215,33277531..33277614,33277705..33277830,33278300..33278359,33278751..33278813,33278924..33279044,33279605..33279678,33279764..33279833,33279916..33280038,33280401..33280480,33280612..33280690,33280793..33280956))
AA seq 382 aa
MRANFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQV
KDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN
ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME
TYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALS
TLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLA
NKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAKVDKCLVDGADEYLQL
LDVASNVIRAVCNMPEEFQYDC
NT seq 1149 nt   +upstreamnt  +downstreamnt
atgagagcgaatttcggaaaaattcacaaaagcgggaaaaacaaaagccctaactttacg
cagaaattctccactacccagtccagtccagaaaaaagcgaggacgaagtaaaaagaaaa
atggcgccagtattgcagagctcacaaccatgggttgaaaaatatcgaccaaagcaagtc
aaagatgtggctcaccaggaagaggtcgtgcgcgtcctcacaaacactctcgagacagcc
aattgcccacacatgttattttacggcccacctggcaccggaaaaaccaccactgccctc
gccatcgcccaccagcttttcgggcctgaactttacaagtccagagtgctagagctgaat
gcaagtgatgaccgtgggattaatgttgttcgtaccaaaattaaaacttttgctgccgtg
gctgtaggctctggtcagcgacgagggggttatccttgtcccccatataagattattatt
ttagatgaagcagattccatgactgaagatgctcagaatgctctgagacgtactatggaa
acttactccaaagtcacaagattcttctttatatgcaattacataagcaggataatagag
cctcttgcttcaagatgtgcaaagttcaggttcaagccactttctgaggaagttatgagt
agccgtgtattgcacatttgtaatgaagaaggactcaatctagatgcagaggctttatca
accttaagttctatatcacaaggtgatctccgcagggctattacatacttgcagggagct
gctcgattatttggatcatcaataacttccaaggacctaattagtgtgtctggtgttatc
ccaccggaggtagtggaggggcttttcgcggtgtgcagaagtggtgactttgatttagca
aataaggaagttaacaacatcattgcagagggatatccagcctctctgcttctttctcag
ttatttgatgtggttgttgaaacagaagatatatctgatgagcagcaggctcgaatatgc
aaatgcttggctaaagtagataagtgtcttgttgatggtgcagatgagtacttgcagcta
ttggatgtggccagcaatgtgatacgagctgtatgtaacatgccagaagagtttcaatat
gattgttag

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