Citrus sinensis (Valencia orange): 102616360
Help
Entry
102616360 CDS
T02983
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102616360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cit03041
]
102616360
Spliceosome [BR:
cit03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
102616360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_EIPR1
PRP4
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_RIG_2nd
eIF2A
WD40_RFWD3
Nbas_N
Beta-prop_SPT8
WD40_like
Tricorn_2nd
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
102616360
NCBI-ProteinID:
XP_006491509
LinkDB
All DBs
Position
9:join(10278318..10279228,10279962..10280415,10280538..10280735,10280841..10280922,10282425..10282519)
Genome browser
AA seq
579 aa
AA seq
DB search
MAAEEENPVSTSLPVSSAAVPDSQALISTIEATPSQPVQPIIPPVIPPMVSAVVPPIAPI
STIPPPQVPAPLAPLPVRPPVFKPPVPAQNGEVRTSDSESDRDEPGPTRASAVEYEISEE
SRQVRERQEKAKQDLLMKRRAAVLAVPTNDMAVRARLRRLGEPITFFGEREMERRDRLRM
LMAKLDSEGQLDRLMKALEEEEAAATATGADVEEEMLQYPFYTEGSKALLDARIDIAKYS
IMNAAKRLQQAQRRRDNPDESIDEEIDYTLKKVESLYLDCTESGDDRPLSGCSYSHDGNL
LATSSLSGVVKIWSMPRLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGS
LLNTFQGHLDRLARMAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFH
PDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIW
DLRKRKSLYVIPAHSNLISQVKFEPQEGYFLVTGSYDMTVKVWSGRDFKLVKSLSGHEAK
VTSLDIHPDEQSIATVSHDRWIKLWSTRNKGDEHAMDVD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgaagaggaaaacccggtatcaacttcactgccagtgtcttccgctgcagtc
cctgatagtcaagcactgatatctacaattgaagcaactccatctcaaccggttcagcct
attatcccaccagttatcccacctatggtttcggcagttgtgcctcctattgctccgata
tccacaattccacctcctcaagttcctgctccattagcaccacttcctgtacgccccccg
gtgtttaagcctccagtgccagcacagaatggggaggtcagaactagtgactctgagtct
gaccgtgatgaacctgggccaacccgggcttctgcagttgaatatgagatttcggaagag
agcagacaggtgagggagcgacaggaaaaggcaaagcaagatctgcttatgaaacggcgt
gctgctgtgctagcagtgcccactaatgatatggctgtccgtgctcgacttcgtcggctt
ggagagcccataacattttttggagaacgagagatggaaaggcgggacaggctgcggatg
cttatggcaaagctcgattctgaagggcagttagataggctgatgaaagctcttgaggag
gaggaggctgcagcaactgctactggggcagatgttgaggaagaaatgctccagtacccc
ttctatactgaggggtcaaaggctctcttggatgccagaatagatattgctaagtattct
atcatgaatgcagcaaagcgcctacaacaagcacagaggagaagggataatcccgatgaa
tctattgatgaggaaattgattacactcttaaaaaggtggagagtttgtaccttgattgc
acggaatctggcgatgatcggccactctctggttgttcctactcacatgatggaaacctg
cttgctaccagctccttgagtggagttgttaagatatggagcatgccaagattgcaaaag
ttctctgccttgaagggacacacagaacgcgccactgatgttacattttcgcctgtgagc
aatcatgtggctacgtcatctgctgaccggacagcaaggttgtggaacactgatggatct
ctcctgaatacttttcaaggccatctggaccgtcttgctcgaatggccttccatccatca
gggaaatacctggggacaaccagctttgacaagacatggagactgtgggatgtagatacc
ggagtagagttgcttcttcaggaagggcatagtagaagtgtctatggaattgccttccac
cctgatggatctttggcagcttcttgcggactagatgctttggcacgtgtttgggacctc
cgtacagggagaagtattcttgccttggaaggccatgtgaagccagtacttggtatcagt
ttttcacctaatggataccatctagcaactggtggtgaggataatacttgtcgaatatgg
gacttaaggaagagaaaatctttatacgtcataccagcacactcgaatctcatatcacaa
gtgaagtttgagcctcaagaaggatacttcttagtgacagggtcgtatgacatgacagtg
aaggtttggtctggcagagattttaagcttgtaaaatccttgtcgggacacgaggcaaaa
gttacttccttggatattcatccagatgaacaatcgattgccaccgtctcacatgataga
tggattaagctatggtcaaccagaaacaaaggagacgagcatgcgatggatgttgactga
DBGET
integrated database retrieval system
