Citrus sinensis (Valencia orange): 102616677
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Entry
102616677 CDS
T02983
Name
(RefSeq) RNA polymerase sigma factor SigC isoform X2
KO
K03093
RNA polymerase sigma-I factor
Organism
cit
Citrus sinensis (Valencia orange)
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cit03021
]
102616677
Transcription machinery [BR:
cit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
102616677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
Motif
Other DBs
NCBI-GeneID:
102616677
NCBI-ProteinID:
XP_006475980
LinkDB
All DBs
Position
1:complement(join(3692944..3693225,3693623..3693823,3693930..3694070,3694388..3694618,3694705..3695360,3695897..3695990))
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AA seq
534 aa
AA seq
DB search
MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD
PVKAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDASSRSDFRLLMENLDVLESTFADS
DALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVHTEEQKMNDSRDYHMGKIL
VPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIAR
NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL
IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI
SKMVARHARGIKIPCKLNREISKIQKARKALTNSNGKYPEDIEIAKYTGLSLAEIRSASE
CLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESLDSRERQVL
VLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFLVL
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggggatgggtttcagattgaacctcaagtgggtgtccccagttcagtctcatttcttc
accacttcctcttgcaggctctcttctacttctgttagaggcagggagggttcgttcaac
tcggcaagactgtcttttttgtccacaatttctgaggacagtgcctcttattttcaagat
cctgttaaagcatatacttgttcatttgtgaatactcagaccgtagaaaatgattattca
gaaacagaagaaattaggcagaaatccacttcttgcattggccaagatgcgagcagcaga
tcagattttagattactaatggaaaatcttgatgttttagagtcgacatttgctgattca
gatgcgttaaggttggaaagagagattcttcaacaactaggaaagcttggagcactaaaa
ttattcaatagccatctatctaggatagttaagacctcaaatgttcttgacttgtctgat
gttcatactgaagagcaaaagatgaatgactctagggattatcacatgggaaaaattctt
gttccttctaaaagaaagggaaaaagaaaattgaagacagcaagggtatcagaagaatcc
attgaaacttctttgctgtctttgccttcagaagccttgcaagaaggcttaaagcagccc
actatcttttcagcagaaagagcattgaactctagaggtaggcgattgacgattgccaga
aacgaggcagaaatgtcaaagggagttcaggtggttgccaacctggagaggataaaaaca
actctggaaaaagaaagtgggaaagcagccagcttgaattgctgggctcaagcagctgga
gtcagtgagagggtgctgaaacagcatctggcttttggttggtattgcagagaagagctg
ataaagagtactcgccccttagtgttattccttgcgagaaactacaggggtctaggaata
ccgttttcagacttgctccaggctggaaatgttggtgttctacaaggcgcagagaggttc
gaccacacaaggggatacaaattctcaacttatgtccagtactggataaggaagtcaata
tcaaagatggtggcaaggcatgctagaggaatcaaaattccttgcaaattaaacagggaa
ataagtaagattcagaaagctcgaaaagccctgaccaacagcaatgggaaatacccagaa
gacattgaaattgccaagtacacgggtctttctttggctgaaatcagatcagctagtgaa
tgcctaagaattgtgggttcaattgatcagaaaattggggattgtcttaatgctaaatat
ttggaatttgcaccagatagatcagtaaagagtcctaaagaaattgtgatgaggcaacac
atgaagaaagacgtctttcgtattttggaaagtttggattcaagagagaggcaagtgttg
gtgctgagatatgggcttaacgaccatcgacccaagtcacttgaggagattgggaagctt
ttccatgtgagcaaagagtggataagaaaattagagaagaaagctatgaccaaattaagg
gatagtgaaacctgcagagatttaagccattttttggttttgtag
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