KEGG   Citrus sinensis (Valencia orange): 102616752
Entry
102616752         CDS       T02983                                 
Name
(RefSeq) DNA repair protein RAD50 isoform X1
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03440  Homologous recombination
cit03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    102616752
   03450 Non-homologous end-joining
    102616752
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cit03032]
    102616752
   03400 DNA repair and recombination proteins [BR:cit03400]
    102616752
DNA replication proteins [BR:cit03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    102616752
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     102616752
    BRCA1-C complex
     102616752
   NHEJ (non-homologous end-joining)
    MRX complex
     102616752
SSDB
Motif
Pfam: AAA_23 AAA_15 Rad50_zn_hook AAA_21 SbcC_Walker_B SMC_N AAA_29 ABC_tran AAA_22 AAA_13 AAA_16
Other DBs
NCBI-GeneID: 102616752
NCBI-ProteinID: XP_006492538
LinkDB
Position
9:join(16134803..16134925,16135047..16135133,16135910..16136077,16137389..16137564,16138813..16138927,16141128..16141356,16141557..16141735,16141829..16141999,16142184..16142288,16142367..16142474,16142588..16142799,16142927..16143019,16143895..16144022,16144391..16144505,16144583..16144712,16144892..16145101,16148024..16148232,16149309..16149510,16150311..16150480,16150557..16150881,16151641..16151766,16151852..16151904,16152202..16152352,16152438..16152500,16152616..16152749,16152836..16152964,16153139..16153178)
AA seq 1316 aa
MSTVDKMLIKGIRSFDPENKNVITFFRPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREVPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESISQDQEKTEALKN
QMQELEKSIQDIDDKIHHTELTLKDLRKMQDQISTMTARRSTLFEQQQKQYAALAEEIED
TDEELKNWKNNFEGIVAKRESDISKLEREKNDMDTKIKFLEQNIDAYTAEITNLLSEAGA
HMSRMNERDSTIQKLFARHNLGSLPNAPFSNEAALNFINRIRSRLSDLERDLEDKKKSDE
LALKMAWDSYLDANDRWKNIEAQKQAKMEIKAGILKHIKEKENERDSFELQISNLNLSHI
DERENKMRIEVERKTNQLAEREFEINIRQKQSELFAMDQKIKALNREKDVLAGDSEDRVK
LALKKAELENHKKKHKKIIDEYKDKIRDVLKGRLPLDRDLKKEITQALRALLTEFDDLSS
KSREADKEVNMLQMKIQEVTDNLSKHRKDVDSKKRFIESKLESLNQQIFSIDTYQKVLDS
AKEKRDVQKSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSAEEEDEFVKKQRVKAAS
SAEHMKVLSLESSNADSYFQQLDKLRMVYEEYVKLSKETIPVAEKNLHELTEELDQKSQA
FDDVLGVLAQIKADKESVEVLVQPVETADRLFQEIQLWQKQVDDLEYMLDSRGQGVRTME
EIQLELSGSLSTKDNLQNELEKLRDEQRYMENDLSNIQIRWHTLREEKVKAANTLRDVKK
AEEELEHLMEEKGQLDLDEKLLAEASGPLSKEKEKLLSDYNDLKVKLNCEYEEQAEQKIN
FQQEIEMLLKIASKIKEYYDLRKDERFKELQEKKSQSESEVKSCKIRTDEILVELDRFKD
IVRNQDQIRRNIEDNLNYRETKAKVDKFASEIESLEERVLKIGGVSTFETELGKHLLERE
RLLSEVNRCQGTMSVYQTNISRNKIDLKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALH
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEIFD
NT seq 3951 nt   +upstreamnt  +downstreamnt
atgagcacggttgataaaatgctgataaaaggaatccggagcttcgaccctgaaaacaaa
aacgttatcaccttcttcagacccttaaccctaatcgtgggccccaacggtgctggcaaa
accacaattatagagtgcttgaagctgtcttgcactggagagttgccgcccaatgcaagg
tccggccacagtttcattcacgatcccaaggttgcaggggaaacagagacaaaaggacaa
ataaagctgcggtttaagacagcagcaggtaaagatgtggtgtgcataaggtccttccaa
ctgacacaaaaggcatctaagatggagtacaaagcaattgagagcgtgcttcaaacaata
aatcctcacactggagagaaagtttgtcttagttatagatgtgcagacatggaccgggaa
gtaccggctctaatgggggtctcaaaagctattctagaaaatgttatatttgtacaccaa
gatgaagcaaattggccattgcaagatccttcgacattgaagaagaaattcgatgatatc
ttttctgcaacccgatacacaaaggctttggaagtcataaagaaacttcataaggatcag
gctcaagagataaagacatacaagctaaaattagagaatcttcagactttgaaagatgct
gcttataagcttcgtgaaagcatttctcaagatcaagaaaagactgaagctttaaaaaat
caaatgcaggagttggaaaaaagcatccaagacattgatgataaaattcatcatactgaa
ctaacactaaaggatttgcggaaaatgcaggaccagatatcaaccatgactgctagaaga
agcactttgtttgagcagcaacagaaacagtatgcagcccttgctgaagaaattgaagat
actgatgaagaattgaagaattggaaaaacaattttgaagggatagttgcgaagcgtgag
agtgacattagcaagctagagagggaaaagaatgatatggatacgaaaattaaatttctt
gagcagaatatagacgcttacacagccgagatcaccaaccttctgtctgaagctggagct
cacatgtcacgaatgaacgaaagagattcgaccattcaaaaattatttgcaaggcataat
ttagggtctctcccaaatgcccccttcagcaatgaagctgctttgaacttcataaatcgc
attagatcaagattaagtgatcttgaaagggacttggaagataaaaagaaatcggatgaa
ctagcgcttaaaatggcatgggatagctacttggatgccaatgatcgttggaagaatatt
gaggctcaaaaacaagctaaaatggaaattaaggcaggcattttgaaacacatcaaggag
aaggaaaatgaacgtgactcatttgaacttcaaatctctaatctcaatctttctcacatt
gatgaaagagagaataagatgcgaatagaggttgagcgaaagactaatcagcttgctgaa
agagagtttgaaataaacatacgccaaaaacagagtgagctgtttgccatggatcaaaaa
attaaagcacttaatcgagagaaagacgtactggctggtgattctgaagacagagtgaaa
ctggctttgaagaaggcggaattggagaatcacaagaagaaacacaaaaagataattgat
gaatacaaggataaaatcagagatgtgcttaaagggaggcttcctcttgacagggatttg
aaaaaagaaattactcaagccctaagggctcttctgacagagtttgatgacttgagctca
aaatctcgtgaagctgataaggaggtaaatatgttgcagatgaaaatacaagaagtgact
gataacctgtccaaacatcgcaaggatgtggactctaagaagagatttattgaatccaaa
cttgagtccttgaatcagcaaattttcagcattgatacttatcaaaaagtcttggactca
gctaaggagaaaagagatgttcagaaaagtaaatacaatattgcagatggtatgcggcaa
atgtttgatccttttgaaagagttgcccgtgctcatcatgtctgcccttgctgtgaacgt
cctttctctgctgaggaggaagatgaatttgttaagaagcaaagagtaaaggcagcaagt
tcagctgagcacatgaaagtgttgtctctggagtcctcaaatgctgattcttactttcag
cagttggacaagctccgcatggtttatgaagaatatgttaaacttagcaaggaaacaatc
cctgttgctgagaaaaacttgcatgagcttacggaagagctggatcagaagtctcaagct
tttgatgatgtgttaggtgttttagctcaaattaaggctgataaggaatcagttgaagtc
ttggtacaacctgttgaaacagctgacagactcttccaagaaattcaattgtggcaaaag
caagttgatgatttggaatatatgctcgactctcgaggacaaggtgttagaactatggaa
gaaatccagctggagctgagtggctctctgagcacaaaggataatctccagaatgaacta
gaaaagttaagggatgagcaaaggtacatggaaaatgatttgtcaaacattcagataaga
tggcacaccctaagggaggaaaaagttaaggcagctaatacattgagggatgtgaagaag
gctgaagaagagttggagcatttgatggaagaaaaaggtcaacttgatctcgatgagaag
ctcttagcagaggcttcaggccctctatccaaggagaaagagaagttactgagtgactac
aatgatttgaaagtcaaacttaattgtgaatatgaggagcaggccgaacagaaaataaac
tttcaacaggaaattgagatgctgcttaaaattgcttctaagattaaagagtattatgat
ttgaggaaagatgagaggtttaaagaactgcaagagaagaaatctcagtcggaatctgaa
gttaaaagttgtaaaatcaggacagatgagattttagttgagctggaccgattcaaagac
atagtgcggaatcaagatcaaataagacgaaatattgaagacaacttgaattacagggaa
acaaaagctaaagtagataaatttgcttctgagattgagtctcttgaagaaagagtattg
aagattggaggggtttccacatttgaaactgaattgggaaagcacttgctagaaagggag
agacttctttccgaggtaaacaggtgccaagggacaatgtccgtttatcagaccaatatt
tcaaggaataaaattgatcttaaacaagcacaatacaaggacattgataaacgacacttt
gaccagctaatccagcttaagacaaccgagatggcaaacaaagacctggatagatactac
aatgcacttgacaaagcactcatgcgcttccacacaatgaaaatggaggaaataaataaa
attataagagaattatggcagcaaacatacagagggcaagatatagattacattaggatt
cactcagactctgaaggtgctgggactcgttcttatagttacaaggttcttatgcagacc
ggagatgcagagctagaaatgagaggaagatgtagtgctggtcaaaaggtccttgcttcc
cttattatacggttggcattagctgagactttttgccttaactgcggaatactggcatta
gatgaaccaaccacgaacttggatggtcctaatgctgagagtcttgcagcagctctccac
agaattatggaggacagaaagggccaggagaactttcaactaattgtgattactcatgat
gagcgtttcgctcaactaattggtcaacgacaacacgcagagaaatattatcgggttgca
aaagatgatcatcagcacagtataattgaagcccaggagatatttgattag

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