KEGG T02983: 102616830

Citrus sinensis (Valencia orange): 102616830

Entry

102616830         CDS       T02983

Name

(RefSeq) protein DAMAGED DNA-BINDING 2

K10140

DNA damage-binding protein 2

Organism

cit Citrus sinensis (Valencia orange)

Pathway

cit03420

Nucleotide excision repair

cit04120

Ubiquitin mediated proteolysis

Brite

KEGG Orthology (KO) [BR:cit00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    102616830
  09124 Replication and repair
   03420 Nucleotide excision repair
    102616830
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cit04121]
    102616830
   03400 DNA repair and recombination proteins [BR:cit03400]
    102616830
Ubiquitin system [BR:cit04121]
Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     102616830
DNA repair and recombination proteins [BR:cit03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      102616830

SSDB

Motif

Pfam:

WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EIPR1 WD40_WDHD1_1st WDR55 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_EML_2 Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st EIF3I PQQ_3 WD40_RFWD3 WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214

Other DBs

NCBI-GeneID:

102616830

NCBI-ProteinID:

XP_006488504

LinkDB

Position

8:join(29863387..29863617,29863707..29863797,29863977..29864104,29864408..29864530,29864645..29864733,29864827..29864947,29865076..29865167,29865879..29866008,29866305..29866550,29866643..29866839,29867221..29867413)

AA seq 546 aa
MAPQTRRMAFPRVVIERDTDTEQSSSEDEEEDREEGPFSESEEEVTENGREEKIEEDLDA
KRKGKAPITISLKKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKMPGHTTMSCPHRVAT
EYGVTPASHRNASNPVEYVFERQLRPNMPHMKPAHMIPDQVNCAVIRYHSRRVTCLEFHP
TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS
CTDLETGLALSLMNINPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSR
SGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVN
SAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPS
ESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG
SSRSIFIWRPKEKSELVEQKEEMKIIVCGKADKKQKHKFGDESEDSDDDTSKLKRKNVRS
KKSRKS

NT seq 1641 nt +upstreamnt +downstreamnt
atggccccgcaaacgagaagaatggcgtttccgagagttgtgattgagagagacacggac
actgagcagagctcatcagaagacgaagaagaagaccgggaggagggcccattttcagaa
tcagaagaagaagtaacagagaatggacgtgaggagaaaattgaagaggatttggatgca
aagagaaaagggaaagctcctattaccatcagtcttaagaaagtttgcaaagtttgtaaa
aagccgggtcatgaagcaggatttaaaggagcaacatatatagattgtccaatgaaacct
tgctttctttgcaaaatgccaggtcacacgacgatgagttgccctcatagagttgctacc
gagtatggggtcactccagcatcccatagaaatgccagcaacccagtagaatatgtcttt
gagcgacagctcagacccaacatgcctcatatgaagcctgcacatatgatcccagatcaa
gtaaactgtgcagtcatcagatatcatagtcgacgagtgacatgtttagagttccatcct
acaaataatcacatccttttatctggagataagaaaggacaagttggagtctgggatttt
tacaaagtatctgaaaagatagtttatggaaacatacattcctgtatagtcaataacatt
aggtttaaccctacaaatgatggtactgtttatgctgcatcctctgatggaactgtcagt
tgcacggacttggagactggcttggcgttatctttgatgaacattaaccctaatggatgg
catggcccacgtacttggaggatgctttatggcatggatatcaatccagagaaaggggtt
gtacttgttgctgataattttggttttctctacctggtggatgcacgaaccaatagcaga
agtggggaggcaatcttgatccaccgaaaaggtagcaaagttgttggtctgcattgtaat
cctattcaaccagaactgcttttaagttgtggaaacgatcactttgctcgtatatgggac
atacggcgattagaagctggatcttctctctgtgaccttcctcacaaacgtgttgttaac
tcggcatatttctctccgtctggtagcaaaatccttaccacttcacaggacaaccgactt
cgtatttgggattctatctttggcaatttggactccccaagcagagaaattgtgcacagt
catgattttaatcgccatctgacaccttttcgagctgaatgggatccaaaggatccatcg
gagtcccttgcagttattggtcgttatataagtgaaaattataatggagctgctctgcat
cccatcgatttcatagatatcactacgggccaattagttgctgaggttatggatccaaat
attacaactatcagtcctgtgaacaagctacatccacgagatgatgttttggcatctggt
agttcgaggtctattttcatttggaggccaaaggagaagtcggaactggtggaacagaag
gaagaaatgaagattattgtctgtggaaaggctgataaaaagcaaaagcataagtttggg
gatgaaagtgaagattctgatgacgacacatccaagttaaagcgcaagaatgtcaggtct
aagaagtcaagaaaaagttag

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