KEGG   Citrus sinensis (Valencia orange): 102617412
Entry
102617412         CDS       T02983                                 
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
  KO
K14327  regulator of nonsense transcripts 2
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03013  Nucleocytoplasmic transport
cit03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    102617412
   03015 mRNA surveillance pathway
    102617412
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102617412
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     102617412
   mRNA cycle factors
    P-body specific factors
     102617412
SSDB
Motif
Pfam: MIF4G Upf2 LRR_R13L1-DRL21
Other DBs
NCBI-GeneID: 102617412
NCBI-ProteinID: XP_006485759
LinkDB
Position
3:complement(join(9345250..9346224,9347277..9347462,9347728..9347898,9348960..9349178,9349271..9349522,9349867..9349968,9350050..9350247,9350350..9350706,9351280..9351361,9351481..9351654,9352578..9352705,9352901..9353005,9353216..9353566,9354268..9354470,9355033..9355120,9355541..9355603))
AA seq 1217 aa
MDHHEDEYRVSGEHNDKQGDEEAVARLEEIKKSIEAKMALRQSNLNPERPDSGFLRTLDS
SIKRNTATIKKLKQINEEQREGLMDELRSVNLSKFVSEAVTAICDAKLRSSDIQTAAQIC
SLLHQRYKDFSPCLIDGLLKVFFPGKSGEDLDADRNLKAMKKRSTLKLLLELYFIGIIED
SSIFINIIKDLTSIEHLKDRDTTQTNLTLLASFARQGRIFLGLPLSGPGQEIYEEFFKGL
NITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSYEKL
RKSYDHLYRNVSSLAEALDMQPPVMPEDVHTTRVTSGEDASPASGKDSSVPEPVWDDEET
RAFYECLPDLRAFVPAVLLGEAEHKANEPSVKPLEQPTDPASEPDQGQLAAQDTAEVSAD
LGASPEGKSVEKGKDKEEKEKEKAKDPDKEKGKGKDKEEKDKEKAKDPDKEKGKEKDTER
KVETEKEKLKGVEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRALFNVP
RTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIRFIGE
LCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILM
RLKNVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIEHVL
RQLRKLPWSDCESYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIR
LGLELNDYGMQQRRLAHMRFLGELYNYEHVDSSVIFDTLYLILVFGHGTAEQDVLDPPED
CFRIRMVITLLETCGHYFDRGSSKRKLDRFLIHFQRYILSKGGLPLDIEFDLQDLFADLR
PNMTRHSSIEEVNAALTELEEHERNVSTDKTNTEKHSDTEKPSRRPTSNTISANGQSAVR
GTEENGRLHEDIGDTDSDSGSGTIDPDGHDEEDLDEGNHDEECDNEDEDDDEGGGPASDE
DDEVRFRQKAAEVDPEELANFEQELRAVVQESMEQRKQELRGRPTLNMMIPMNVFEGSSK
DHHGRTVGGGSGDEALEEDIGEVKEVQVKVLVKRGNKQQTKQMYIPRDCTLVQSTKQKEA
AELEEKQDIKRLVLEYNDREEDNNGLGTQILNNWMPSGSSRVASRGSSWEGTSRRTGGSR
HGHHYYSGGGTYHSRRK
NT seq 3654 nt   +upstreamnt  +downstreamnt
atggatcaccatgaggatgaataccgtgtcagtggtgaacataatgacaagcaaggtgat
gaggaagctgttgctcgccttgaggaaattaagaaatcaattgaggcaaagatggcgctc
cgtcaaagcaatttgaatcctgaaaggcctgattccggattcctcagaacattggattcc
agcattaagcgcaacacagcaactatcaaaaagttaaagcagataaatgaagagcagcga
gaaggactgatggatgagttgagaagtgtcaatcttagcaaatttgtcagtgaggctgtg
acagctatttgtgatgccaagcttagaagttcggacatacaaacagcagctcagatatgc
tctttgcttcatcaacggtacaaagacttctcaccatgcctcattgatggactcttgaaa
gtattctttcctggaaaatctggagaggacttagatgctgacaggaacttgaaggccatg
aagaagcgcagcaccctgaaactccttctggaactttattttatcgggattatagaagat
agcagcatattcattaatatcatcaaggatcttactagcatagaacacttaaaggaccga
gatactacgcagacaaatttgacgcttcttgctagttttgctcgacaaggaagaatcttt
ttaggactcccactgtctggacctggacaagaaatttatgaagagttttttaagggcctt
aatatcacggcagatcaaaagaaaattttcaagaaggcatttcatacatattacaatgct
gtccaagaacttcttcaggcagagcatacttcactccggcaaatggaaaatgaaaatgca
aagattttaaatgctaaaggagagctcagtgaagaaaattcatcctcatatgaaaagcta
cgaaaatcttatgaccatttgtaccgtaatgtctcctctttagcagaggcacttgatatg
cagcctccagtcatgccagaggatgttcacactactcgggttacctctggagaagatgct
tctcctgcatctggcaaagattcttctgtgccagaacctgtgtgggatgatgaagagact
agggctttctatgaatgcttacctgatctcagagcatttgtgccagcagtattactggga
gaagcagagcataaagcgaatgagccatctgtgaagccattggagcaaccaactgaccct
gcttctgaaccggaccaaggtcagttggccgcccaagatactgcagaggtttctgcagat
ttgggtgcttcgccagagggaaaatcagttgagaaaggaaaagataaagaagaaaaagag
aaagaaaaggccaaagatccagacaaggagaaaggaaaaggaaaggataaagaagaaaaa
gataaagaaaaggctaaagatccagacaaggaaaagggaaaagaaaaggatacagaaaga
aaggtggaaactgaaaaggagaaacttaaaggtgttgaggggacaaatttggatgctcta
ttgcagagactcccaggctgtgtcagccgcgaccttatagatcaattgactgtggagttt
tgttatttaaattcaaagtcaaataggaaaaggctagtaagggcattgtttaacgtacca
cgaacatctttggaactgctgccatactactcacgcatggttgccacactttcaacttgt
atgaaggatgtctcttccatgctgatacagatgttggaagaagagttcaacttcttgata
aataaaaaggatcaaatgaacattgaaacaaagatcaggaatattaggtttatcggagaa
ctatgcaagttcaaaattgctccagctggtcttgtttttagttgtctaaaggcttgtttg
gatgatttcactcatcataacattgatgttgcatgcaatcttcttgagacgtgtggccgc
tttctgtatcgttcccctgaaactagtatacggatggctaacatgttggagattttaatg
cgcttgaagaatgtcaaaaatttggacccccggcatgtaactcttgtggaaaatgcttac
tacctgtgcaaacctcctgaaagatctgcacgagtatctaaagttcgtcctccattacat
cagtatatcaggaagttactattctctgatcttgataagtcttccattgagcatgtgctg
aggcaactccgtaaattaccttggagtgattgtgagtcataccttttgaagtgctttatg
aaggttcataaagggaagtatggtcagattcacttgattgcttcgctcactgctggttta
agtcgctatcatgatgagttcgctgtagctgttgttgatgaggttttggaggagattagg
cttggtctggaattgaatgactatgggatgcagcagagacgccttgctcatatgcggttt
ctcggggagctatacaactatgaacatgtggactcatctgttatctttgatacactttat
ttgattcttgtcttcggccatgggacagcagagcaagacgtactggacccaccagaagat
tgtttccggatcaggatggttattactcttcttgagacttgtggtcactactttgaccga
ggctcttccaagaggaaacttgatcgatttttgatacacttccagaggtatattctcagc
aaaggtggactcccactggatattgaattcgacttacaggatttatttgcggacttgcgc
ccaaacatgactcgacattcttccattgaggaagttaatgcagctctgacagagcttgaa
gagcatgaacgtaatgtctcaacagataaaactaataccgagaagcactctgacactgaa
aagccttctaggcgacctacttccaacaccatttcagctaatggacaaagtgcagtacgt
ggtactgaggaaaatggtagactgcatgaagacattggggacactgacagcgattcagga
agtggcacaattgacccagacgggcatgatgaagaagacttggatgaagggaatcatgat
gaagaatgtgacaatgaggacgaggatgatgatgagggcggcggacctgcttctgatgag
gacgatgaagttcgtttcagacagaaggctgcagaggttgaccctgaggaactagcaaat
tttgagcaggagctccgggctgtagttcaggagagcatggagcagcgcaaacaagagcta
agaggccggcctactttaaatatgatgatcccaatgaacgtgtttgaaggatcttcgaag
gatcatcatgggaggacggttggagggggaagtggtgatgaggcattagaggaggacatt
ggagaagtcaaggaagttcaggtgaaagtccttgtgaagcgtggaaacaagcaacagaca
aagcaaatgtacattcctcgagattgcacccttgtgcaaagcacaaaacagaaagaagca
gctgagttggaggagaaacaagatataaagaggctggtattggagtataatgatagagaa
gaggataataatgggttgggaacacagatattgaataattggatgccaagtggcagcagc
agagttgcaagccgaggtagctcatgggaaggaaccagcaggagaactggtggatcacgc
catgggcatcattattattcaggtggaggaacctaccacagcaggagaaaatga

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