KEGG   Citrus sinensis (Valencia orange): 102617632
Entry
102617632         CDS       T02983                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102617632
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102617632
   03012 Translation factors [BR:cit03012]
    102617632
Enzymes [BR:cit01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     102617632
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     102617632
Translation factors [BR:cit03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    102617632
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD dsrm HA2_N AAA_22 nSTAND3 ATPase AAA_19 NACHT Myosin_head NPHP3_N ABC_tran PhoH T2SSE Dicer_dimer TsaE
Other DBs
NCBI-GeneID: 102617632
NCBI-ProteinID: XP_006468781
LinkDB
Position
2:complement(join(25069756..25070217,25070422..25070532,25070653..25070805,25070940..25070999,25071310..25071615,25072198..25072346,25072450..25072519,25072701..25072904,25073423..25073617,25073727..25073999,25074111..25074278,25075387..25075517,25075598..25075757,25075869..25076057,25076196..25076291,25077117..25077362,25077719..25077806,25077900..25078054,25079198..25079656))
AA seq 1224 aa
MIPLPSLTLLLSPHLPLFHLSSNSHSKTLIPRPKLRKRSFITIMKDRPPPSYGAVYVPPH
HRPRSVVTATPYCSSISPDASPLSHLQTKKQQLNSKTKSKNNNNYGSNHKDDNKYNNCGS
NDNSKKNLQHNSAYSDVLSEEGSDREPESMLQPGSSPYDNVEDWKQKLTLLLYDKEKQEL
ISREKKDRRDFEQISALASSMGLYSHLYAKVVVFSKVPLPNYRFDLDDRRPQREVIVPMG
LLRRVDSYLRKYLSQKSKTKKSLSDFSVSRSSSSSSLATEDGLFEQPEPLASSKSVMDKI
LWRRSLQLHDQQHSWQESPDGRKMLEFRRNLPAYKEKNRLLAAISQNQVVIISGETGCGK
TTQVPQFILESEITSVRGAVCSIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEG
MKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEVHERGMNEDFLLIVLKDLLSRRPE
LRLVLMSATLDAELFSSYFGGATVINIPGFTYPVRTHFLEDILDMTGYRLTPYNQIDDYG
QEKMWKMSKQAPRKRKSQIASAVEDTLKAANFNEYSSQTRESLSCWNPDCIGFNLIEYVL
CYICEKERPGAVLVFMTGWDDINSLNDKLQANRILGDPTRVLLLTCHGSMASSEQRLIFD
EPESGVRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTSCLLPSWISKVSAQQ
RRGRAGRVQPGECYRLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGTIAEFLSRA
LQSPELLAVQNAIEYLKIIGALDHNEELTVLGQYLAMLPMEPKLGKMLILGAIFNCLEPV
LTIVAGLSVRDPFLAPMDKKDLAEAAKSQFSHDYSDHLALVRAFEGWKDAERGLAGYEYC
WKNFLSAPSMKVIDSLRKEFLSLLKDTGLVDCDTSICNAWGRDERFIRAVICYGLYPGIS
SIVQNGKSSSLKTMEDGQVFLYSNSVNARESEIPYPWLVFNEKMKVNSVFLKDSTAVSDS
VLLLFGGSISQGEIDGHLKMMGGYLEFFMNPSVADMYQCIRRELDELIQNKLLNPRLNIH
THEDLLAALRLLVAEDQCEGRFIFGHQVFKPSKPSVVGAQPAFISRTESGPGGDNSKSQL
QTLLTRAGYAAPSYRTKQLKNGQFRSTVEFNGMEIMGQPCNNKKNAEKDAAAEALQWIMG
GIKTSEECINHMSILLKRSKKDHS
NT seq 3675 nt   +upstreamnt  +downstreamnt
atgatcccgcttccctctcttactctcctcctctctccgcatttaccactattccatctg
tcttcaaattcacactccaaaaccctaataccgaggccaaaacttcgtaaacgctccttc
attacaatcatgaaggataggcctccgccttcgtacggcgccgtttacgtccctcctcac
caccgtccccgctccgtcgtcaccgccacgccttattgctcctcaatcagccccgatgcc
tctcctctttctcaccttcaaaccaaaaaacaacaactgaatagtaagaccaaaagcaaa
aataacaataattatgggagtaatcataaggacgacaacaagtataacaattgtggcagt
aatgataatagtaaaaaaaatttgcaacacaattcagcgtacagcgatgttctatcggag
gagggctctgatcgtgagccggagtcgatgttgcaaccgggttcttctccttatgataat
gtggaggattggaaacagaagttaaccctgcttttatatgacaaggagaagcaagaattg
atttcaagggagaaaaaggatagacgtgactttgagcaaatctcagctttggctagcagc
atgggtttgtacagccatctttatgcaaaagttgttgtctttagtaaggtccctttgcca
aactacagatttgacttggatgatagacgtccgcagagagaggtgattgtacctatgggt
ttgcttagacgggttgattcctatcttaggaagtacctctctcaaaagtcgaagaccaaa
aaaagcctttcagacttttctgtctcgaggtcaagcagtagcagtagccttgctactgag
gatggtctttttgaacaaccagagccacttgcatccagtaagtctgtcatggataaaatt
ctgtggcgcagaagtttgcaactgcatgatcagcagcactcttggcaggagtcaccggat
ggtagaaagatgcttgaatttcgtaggaatctccctgcttataaagagaagaacagacta
ttggcagccatttcacaaaatcaggttgttattatatccggtgaaactggctgtggcaag
accacacaagttcctcaattcattctagaatctgaaatcacgtctgtacggggtgctgtt
tgtagtatcatatgtacacaaccaagacgtatttctgctatgtctgtttctgagagagtt
gcttcagagagaggcgagaaactgggtgaatctgttgggtataaagttcggttggaaggt
atgaaaggaagggatactcgccttctcttttgcaccacaggcatattgttgagaaggttg
ctggttgacagaaatttgaaaggtgtaactcatgttattgtcgatgaggttcatgaacgg
ggaatgaatgaggattttctgctcattgtccttaaagatcttctctctcgtcgcccagaa
ctaaggttggttctgatgagtgcaacactagatgcagagcttttctcatcctactttggt
ggggctacagtaataaacattccgggtttcacatacccagtcagaactcattttctggaa
gacattttggacatgactggttacagattgaccccatacaatcaaattgatgattacggt
caagaaaaaatgtggaaaatgagcaaacaagcaccgagaaagaggaagagccaaattgcc
tctgctgttgaggatacgctcaaagcagctaacttcaatgagtatagctctcagacacgg
gagtctttgtcatgttggaatcctgattgtattggttttaatctgatagaatatgtttta
tgctatatatgcgagaaagaaaggcctggtgctgttctagtttttatgactggttgggat
gacataaattcactgaatgataagctacaagctaatcgtatcttaggagatccaacccga
gttttgttgcttacttgccatggttccatggctagttcagagcagaggttaatatttgat
gaacctgaaagtggagtgaggaaaatagtccttgctactaacatagcagagacaagtatc
accattaacgatgttgttttcgtcatcgactgtgggaaagcaaaggagacatcctacgat
gcactgaataacacttcttgtctgcttccttcctggatttctaaggtttctgctcaacaa
agaagaggaagggctggccgtgtgcaacctggagaatgttaccgtctctaccctagatgt
gtatacgatgcttttgctgaatatcagcttccagaaattttgaggacacctttgcagtct
ctttgtttgcaaattaaaagtttaagacttgggactatcgctgagttcctatccagggct
cttcagtcgcctgaattactagcagttcaaaatgctattgaatatttaaaaatcattggg
gcactggaccacaatgaagagttgactgttctgggacaatatttggctatgcttccaatg
gagcctaaacttggaaagatgctcatattgggtgctatcttcaattgcctggaaccagtt
ttaaccatcgttgctgggcttagtgtcagagatcctttcttagcaccaatggacaagaag
gatcttgcagaggctgcaaaatctcagttttcacatgattacagtgaccatcttgcactt
gttcgggcctttgaaggatggaaagatgctgaaagaggcctggctggatacgaatactgt
tggaaaaactttttatcagcaccgtcgatgaaagttattgattctcttcgaaaagagttc
ctctctttgctcaaggatactgggctcgttgattgtgacacatctatctgcaatgcctgg
ggtcgtgatgaacgcttcattcgagcagttatttgttatggtttatatcctgggatttcc
tctattgtgcaaaatggaaagtcaagttcactgaaaaccatggaggatggtcaagtgttt
ctatattctaattcagtcaatgctcgggaatctgaaatcccctatccatggctggttttc
aacgagaagatgaaagtgaactctgttttccttaaggattctacagctgtctctgattca
gtactgcttctatttggtggaagcatatcgcaaggagaaatcgatgggcacttgaaaatg
atgggaggatatttggaattcttcatgaacccctcggttgctgacatgtatcaatgcata
aggagagaacttgatgagctgatacagaacaaattgctgaatcccagattgaacatacat
acccatgaagacctcctggctgcattgcgattgctagttgccgaggatcagtgtgagggc
agatttatatttggtcaccaggtgtttaagccctccaagccctcagttgtgggggcacag
cctgctttcatttcaaggactgaaagcggacctgggggtgataattctaagagtcagctc
caaacactgctcacaagagcaggatatgctgcacctagctacagaacaaaacaattgaag
aatggccagttcagatccaccgtggagtttaatggaatggaaattatggggcaaccttgc
aacaacaagaagaatgcagaaaaagatgcagcggctgaggctttgcagtggataatgggt
gggatcaaaacaagcgaggaatgtataaatcacatgtcgatattgctaaagagaagtaag
aaggatcattcctag

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