KEGG   Citrus sinensis (Valencia orange): 102617803
Entry
102617803         CDS       T02983                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03020  RNA polymerase
cit03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    102617803
  09124 Replication and repair
   03420 Nucleotide excision repair
    102617803
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cit03021]
    102617803
   03400 DNA repair and recombination proteins [BR:cit03400]
    102617803
Enzymes [BR:cit01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     102617803
Transcription machinery [BR:cit03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     102617803
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      102617803
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 102617803
NCBI-ProteinID: XP_006487405
LinkDB
Position
8:complement(join(7980575..7980697,7980816..7981238,7981389..7981688,7981772..7981915,7981998..7982051,7982130..7982199,7982316..7982431,7982520..7982615,7982714..7982791,7982878..7983003,7983128..7983232,7983321..7983476,7985093..7985209,7985298..7985405,7985510..7985586,7985743..7985815,7985928..7986065,7986156..7986200,7986315..7986435,7986523..7986609,7986692..7986756,7987757..7987954,7988132..7988422,7988511..7988732,7988814..7989068))
AA seq 1195 aa
MMEDDYDYEEQHQQEEEDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI
VDESADIEIRPESQHNPGQQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR
NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT
ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP
PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFQ
DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTRDKRIKYAKEILQKEMLPHVGT
GDFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR
DVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT
YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV
GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRV
DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKRDIIALQQRESPEDGGWH
DLVAKGFIEYIDTEEEETTMISMTINDLVQARLHPEEAYADTYTHCEIHPSLILGVCASI
IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR
QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG
RPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDH
SISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE
DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK
ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ
PAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKN
SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKEDTKQSKDHKKKGA
NT seq 3588 nt   +upstreamnt  +downstreamnt
atgatggaagacgattatgattacgaagaacaacatcaacaggaggaagaggatgaagag
gaggagatcacgcaagaggatgcgtgggcggttatttctgcttatttcgaagaaaagggt
ttggtgaggcagcagctcgactcttttgacgaatttatccagaacaccatgcaagaaatt
gttgatgaatccgcggatatcgagattcggcccgaatcccaacataatcccggccaacaa
tctgattttgccgagaccatctacaagatcagttttgggcagatatatctgagcaaacct
atgatgacagaatcagatggagaaactgcgacattattcccaaaggctgcaagattgagg
aacttaacctactcagctcctttatacgtggatgttacgaagagggttataaagaaaggc
cacgatggtgaagaagtcaccgaaacccaagatttcactaaagttttcattggaaaggta
cccataatgcttcggtcaagttactgcacactgtatcaaaactctgagaaggatttaacg
gagcttggggagtgcccgtatgatcaaggtggatattttatcatcaatgggagtgaaaaa
gttctgattgctcaggagaagatgagcaccaatcatgtctatgtcttcaagaagcggcaa
cctaacaagtatgcctacgtggcagaagttcgttctatggcagagtcccagaacaggcca
ccgagcacaatgtttgtacggatgctttctcggactagtgccaaagggggctcttcaggg
cagtacattcgtgcaacccttccatacattcgtactgaaattcctatcatcattgttttt
cgggctttagggtttgtggctgacaaagatatattagagcacatttgttatgacttccaa
gacacgcaaatgatggaattgcttcggccttcccttgaggaagcgtttgtcattcaaaat
caacaggtggcactcgactacattggaaaaagaggagcaactgttggtgtaactagggat
aaaaggatcaaatatgccaaagagatccttcaaaaggaaatgcttcctcatgttggtaca
ggagacttctgtgaaacaaagaaggcttactattttggatatatcattcatcggcttctt
ctatgtgcacttggccggagggctgaagacgatagggatcattacggcaacaagaggctg
gaccttgctggtcctttgcttggaggcttgtttaggatgctctttagaaagttgaccagg
gatgtaagagcttacgtgcaaaagtgtgttgataatgggaaggatgtcaacttgcaattt
gcaatcaaggcaaaaaccattaccagtggtctcaagtactcacttgctactggaaactgg
ggtcaagcaaatgcagctggtacaagagctggagtttcacaggtgttaaatcgtctaact
tacgcctctactttgtcgcatttgcgaagattaaattctcccataggccgtgaagggaaa
ttggccaaacctaggcaattacataattcacagtggggaatgatgtgcccagctgaaaca
cctgaagggcaagcttgtggtctggtaaagaatctggcattgatggtgtacataacagtt
ggatcagcagcatatccgattttggaatttttagaagaatggggaacagagaattttgag
gaaatttctccagcagttattcctcaagctacaaaaatttttgtcaatggttgttgggtt
ggtattcaccgtgatcctgaaatgttggttaaaactttgagaagattgaggagacgggtt
gatgtcaatactgaagttggggtggttagagatattcgtttgaaagaattacggatatat
accgattacggtcgatgtagtcggccactgtttattgtagagaaacaaaggcttcttata
aagaagagagacatcattgctctgcagcagagggaatcccctgaagatggtggttggcat
gaccttgtggcgaagggatttatagaatatattgacactgaagaagaagagaccacaatg
atttccatgacaattaatgatcttgtacaagcaaggcttcatccagaagaagcttatgct
gacacttacacgcattgtgagatccatccatccttgattttaggtgtatgtgcttcaatt
ataccgtttcctgaccataatcagtccccacgtaacacgtatcaatcagctatgggtaag
caagccatggggatctatgtcaccaactaccaatttcgtatggatactttggcgtatgtt
ctctattatcctcagaagccacttgttactacacgagcaatggaacacctccacttcagg
cagcttccggctggcattaatgctattgtcgcaatcgcttgctattctggctacaaccaa
gaagattctgttattatgaaccaatcgtcaattgaccgtgggttctttcgatctcttttc
ttccgttcatatagagatgaggagaaaaagatggggacccttgttaaagaagattttgga
cgtccagatagatctaatactatgggcatgcggcatggctcttatgataaattggatgat
gatggtcttgcgcctcctggcacaagggtttctggtgaggatgtgatcattgggaagacc
actcctatttctcaggatgaagctcaaggacaagcgtcacgctacaccagacgggatcat
agcataagcttacgtcacagtgaaacagggatggtggatcaagttttactgacaaccaat
gctgatggattgaggtttgtgaaagtgagagttagatctgtccgtataccccagattgga
gacaagtttagtagtaggcatggtcagaagggaactgtgggcatgacttacactcaggaa
gacatgccgtggacggtggaaggcatcacccctgatatcattgtgaatccacacgctatt
ccatctcgcatgactataggtcagcttattgagtgcatcatggggaaggttgcagctcac
atgggaaaggaaggtgatgctacaccttttactgatgtcacagtggataatatcagcaaa
gctctacacaaatgtgggtatcaaatgcgtgggtttgagacgatgtacaatggtcacact
ggcagacgactcactgctatgatattccttggccccacatattaccaaagactgaagcac
atggttgatgataaaatccattctcgtggtaggggtcctgtacagattcttacaaggcag
cctgctgagggacgatctcgggatggtggccttcgatttggagaaatggagagagattgt
atgattgctcatggtgcttcccactttctcaaggagaggttgtttgatcagagtgatgca
taccgtgttcacgtatgtgagcattgtgggttaatagctattgcaaatctgaagaagaat
tcatttgaatgcagaggttgtaaaaacaaaactgatattgtacaggttcacatcccctat
gcatgtaagttactgtttcaagagctaatggccatggccatagcaccaagaatgctcaca
aaagaggacactaagcaatccaaagatcataagaagaaaggagcttag

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