KEGG   Citrus sinensis (Valencia orange): 102617966
Entry
102617966         CDS       T02983                                 
Name
(RefSeq) protein TORMOZ EMBRYO DEFECTIVE isoform X1
  KO
K14555  U3 small nucleolar RNA-associated protein 13
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    102617966
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cit03009]
    102617966
Ribosome biogenesis [BR:cit03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    102617966
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Utp13 EIF3I Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_SCAP Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_EIPR1 NBCH_WD40 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IFT122_1st Beta-prop_Nup120_160 Beta-prop_SPT8 Beta-prop_DCAF12 WD_LRWD1 WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_NWD2_C Beta-prop_NOL10_N Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Ge1_WD40 WD40_like Beta-prop_Vps41 Nbas_N
Other DBs
NCBI-GeneID: 102617966
NCBI-ProteinID: XP_006478934
LinkDB
Position
3:complement(join(39251048..39251404,39252050..39252224,39252288..39252418,39253080..39253199,39254054..39254130,39254209..39254455,39254831..39254987,39255153..39255271,39255466..39255600,39256475..39256757,39256925..39257142,39258711..39258860,39259192..39259374,39259485..39259781))
AA seq 882 aa
MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS
DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA
GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC
VATLDKHFSRVTSMAITSDGSALLSAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP
GSAFDSFLSSYNQQTIKKKCRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISSEM
DDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK
FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD
NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ
PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIW
SVEFSPVDQVVITASGDKTIKMWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG
LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFR
KEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCRKREAELQIEKALHA
LGKEEIRQLLEYVREWNTKPKLCHVAQFVLFQLFNIHPPTEIIEIKGISDVLEGLIPYTQ
RHFSRIDRLVRSTFLLDYTLTGMSVIEPDTEAREVKAESLVDSNVHQDANDVVITENVAK
EQIESEGKTASKKRKSHKSRESSHKKERRADQTNAAAISLQA
NT seq 2649 nt   +upstreamnt  +downstreamnt
atggcatccctaccactaaagaagagctacggatgcgaacctgtcttacaacagttctat
ggcggtgggccgttggtggtttcatcggacggctcattcatcgcgtgtgcgtgcggcgag
tctatcaacattgtggacttatcaaatgcctccataaagtcaacaattgaaggcgggtcg
gatacaatcacggccttggcccttagtcccgacgataagctgctcttctcttctggtcac
agtcgggaaattagggtttgggatttatcaacactaaaatgtttgcgctcctggaagggc
catgacggtcctgcaattggaatggcatgtcacccatccggtggattgcttgctactgca
ggagctgataggaaagttcttgtttgggatgtcgatggtggcttttgcactcattacttc
aaaggtcataagggagttgtcagtagtatcttgtttcatcctgacacggataaatctctt
cttttctctggtagtgatgatgcaactgtgcgagtttgggatcttttagccaagaaatgt
gttgcaactttggataagcatttctcaagagttacttctatggctataactagtgatgga
tcggcattgctcagtgctggaagagataaggttgtaaacttgtgggaccttcgtgactac
agttgcaagttgactgtgccaacatatgagatggttgaagctgtgtgtgccattcctcct
gggagtgcttttgattcatttctaagttcatacaatcagcagactataaagaaaaaatgc
aggtcactagaaattcatttcatcactgtcggtgaacgagggatcgtgcgcatgtggaat
gcagatagtgcatgcctatatgaacaaaagtcctcagatgttaccattagctctgagatg
gatgactcaaaaaggggctttactgcagctaccgtgcttccttcaaatcaaggactgctt
tgtgtgactgctgatcagcagcttcttttatataccacagttgaagttcctgaaaaaaaa
atggagttgattctgagcaaaaggcttgtagggtataatgaggagatactggatttgaaa
tttttgggggaggaagagcagtatcttgctgttgctactaatattgaacaggttcaagtg
tatgatctttcatccatgtcatgttcctatgtattggcaggccatagtgaaattgttttg
tgccttgacacttgtgcattgagttctggaaaaatcctcattgtaacgggaagtaaggac
aatagtgtaaggttgtgggattcagaaagcagatgttgtgttggagtgggcacaggccat
atgggagctgttggagcagttgctttttcaaaaaagttgcaaaattttcttgttagtggc
agtagtgatcataccattaaggtttggagtttcgatggtctctcagatgatgcggaacag
ccgatgaacctgaaagctaaagcagtagtagctgctcatggtaaagatataaattctctg
gctgttgcaccaaatgatagtttggtttgcactggttctcaggatcgcactgcttgtgtt
tggaggcttccagatctggtgtctgttgttacttttcgagggcataaaagagggatttgg
tctgtcgagttttcaccagttgatcaagttgttataacagcttctggtgacaaaacgatt
aagatgtggtcgatatctgatggttcatgtttaaaaacatttgaagggcacacatcaagt
gtactaagagcttcttttctgactcgtggggcccaaattgtttcttgtggtgccgatggt
ctggtgaaactgtggacagtcagaactggtgaatgtattgccacatatgataagcacgag
gacaagatttgggccttggctgtcgggaagaagacagaaatgtttgcaactggtggcagt
gatgctcttgttaatctgtggcatgattcaactgctgctgagagagaggaagctttccga
aaagaggaagaagcggttttgagaggtcaggaattagaaaatgctgtgttggatgctgac
tacactaaagcaatccaagtagcatttgaacttcgcaggcctcataaactttttgagtta
tttgccagtgtgtgcaggaagagagaagcagaacttcagatagagaaagcccttcatgca
ctgggcaaggaagagattcgtcaacttcttgagtatgttcgagaatggaatacaaagcca
aagttgtgtcatgttgcgcaatttgtgctattccagcttttcaacatccatcctcctaca
gagattattgagataaaaggcatttccgatgttctagaaggcctcattccatacactcaa
cggcatttcagcaggattgatagacttgtaaggagtacatttttgttggactatacttta
acaggaatgtcagttatcgaaccagatactgaagcaagagaggtgaaggccgaatcgttg
gtagactctaacgtccaccaggatgctaatgatgtggttataacagaaaatgtcgcgaag
gagcaaatagagtcagaaggaaagactgcttcaaagaaacgaaaatcacacaaatcaaga
gagagctctcataagaaagaaaggagagctgatcagacaaatgcagcggctatatcattg
caggcataa

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