Citrus sinensis (Valencia orange): 102618153
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Entry
102618153 CDS
T02983
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102618153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102618153
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102618153
mRNA degradation factors
5'-3' decay
Decapping complex
102618153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
102618153
NCBI-ProteinID:
XP_006481340
LinkDB
All DBs
Position
6:complement(join(18712141..18714185,18715750..18715822,18716505..18716561,18717401..18717555,18717789..18717840))
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AA seq
793 aa
AA seq
DB search
MERSRGKDFLNFTRTSSGSAMFDASQYEFFGQNVGEEVELGGLEDEGDNNAPVFGSVTDD
EYHLFDKGEGLGLGSLSDVDDLTTTFAKLNRVVTGPRNPGVIGDRSGSFSRESSTATDWA
QDGEFGNWLDQQMLDLENSEEGKRWSSQPQPSSALFSESKPLYRTSSYPQQPTQHHFSTE
PILVPKSSFTSFPPPGSRSQQASPRHLNIPSPSGGSQSPFTAPNLSPVSSSNLHMVGLSH
GLRYGANMSQITSPGLSFNNRLQNHWVSHAGLLHGDHSSLLHNLLQQQLPYQNGLISPQL
MSPQQQLQQQRMHHPVPPSLAHFSALQPQLYSAHHSSSHKAMHGADIRDHKPKTSHRSRG
GTRLSHQSSDASSQKSDSGWVQFRSKYMTAEEIESILKMQHAATHSNDPYVDDYYHQASL
AKKSTGSRMKSHFCPSHLKELPSRARNSTEHLQADALGRIPLSSIRRLRPLLDVDPPSGS
SDGSTDQKVSEKPLEQEPMLAARITIEDGLSLLLDIDDIDRLLQSGQTQDGGVQLRQRRQ
ALLEGLAASLQLVDPLGKSGHPVGLALKDDIVFLRLVSLPKGRKLFIKFLKLLFPGSELT
RIVCMAIFRHLRFLFGGLPSDPAAAETTSNLAKTVCTCVKTMDLRSLSACLIAVVCSSEQ
PPLRPLGSPAGDSATIILISVLDRANELLAHAAGSMRNLDLWHASFDNFFDLLTKYCMSK
YETIKQSQPSTEVNNSEAIKREMPRELLRASLPHTNDEQLNSLRNFASQCESNAESIPCA
GHGNQIISESVRG
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggagagatcccgtggcaaagatttcctcaacttcactcgcacctcctccgggagtgcg
atgtttgatgcgtcgcagtatgaatttttcggtcaaaatgttggggaggaagttgaatta
gggggactcgaagatgagggagataataatgctcctgtctttggatcggtaactgatgat
gagtatcatttgttcgacaaaggagaaggtttaggtttaggctctttgtctgatgtggat
gatttgactactacgtttgcaaagttaaacagagttgtgacaggaccacgaaacccagga
gttattggtgatagatctggatcattttcaagggaaagttcaacagctacagactgggca
caagatggagaatttgggaactggttagatcagcaaatgcttgacttagaaaattctgag
gaaggaaagagatggtcgtctcaacctcaaccttcttctgctcttttttcagaatcaaaa
cctttgtacagaacatcctcatatccccagcagccaacacagcatcatttctctaccgaa
cctattcttgttcccaaatcaagtttcacgtctttccctcctccaggtagcaggtctcag
caggcttcacctcgccatctgaatattccctctccatctggtggatctcagtcacctttc
actgcaccaaatctctctcctgtatccagctctaaccttcacatggttggcttatctcat
ggtttgcgatatggtgcaaatatgtctcagatcacctcgcctggcctttcttttaataac
aggctgcaaaatcactgggttagccatgctggtctgttacatggtgatcactccagcctc
ttgcacaatttactgcaacaacagttaccctatcaaaatggcctgatttctccgcagttg
atgtcaccacaacagcaattgcaacagcaaagaatgcaccatccagttccaccatctttg
gcccatttttcagctttgcaaccccaactatacagcgcccatcattcatcatcccacaag
gcaatgcatggagctgatattagggatcataaaccaaaaacgtcgcatagaagcagaggt
ggtacgcgtttgtcccatcaaagctccgatgctagtagtcagaaaagtgatagtgggtgg
gtgcaattcagatccaagtatatgacagctgaagagatcgaaagtattcttaaaatgcag
catgcagcgacacatagcaatgacccatatgtagatgattattaccaccaagctagtctt
gcaaaaaaatctactggatcaaggatgaaaagccatttctgtccgtctcacttgaaggag
ctcccttctcgagctcgcaatagcacagaacatcttcaagctgatgctcttgggagaatt
cccctctcttccatacgtaggcttcgtccacttctggatgtggaccctccctctggttct
tctgatgggagcactgatcagaaagtctcagagaagcctctggaacaggaaccaatgctt
gcagctaggatcaccattgaagatggcctttctcttcttcttgatatagatgatattgac
cggctcttacaatctggtcagactcaagatggtggtgttcagcttaggcagaggcggcag
gccctgctggaaggattggcagcatcacttcagcttgttgatccacttggcaaaagcggc
cacccagttgggctagctctgaaggatgatattgtgttccttaggttggtctctcttcct
aagggccggaagctcttcatcaagttccttaagctcctctttcctggtagtgagcttaca
agaattgtctgcatggctattttccgtcatttgaggtttttgtttggtggccttccttct
gatcctgctgcagctgagacaacaagtaatcttgcaaaaacagtatgcacatgtgttaaa
accatggaccttcgttcacttagtgcttgtcttattgcagttgtttgttcttcagagcag
ccaccactccgcccccttggaagccctgctggtgatagcgctaccataattttaatatca
gttcttgatagagcaaatgaactgctagcccatgctgctggtagcatgcgtaatcttgac
ctttggcatgcttcatttgacaattttttcgatcttctgaccaagtattgcatgagtaaa
tatgaaacaataaagcagtcccagccaagcacagaagttaacaattcagaggctataaag
cgagagatgcccagggagcttctacgcgctagtcttcctcacactaacgacgaacagctg
aattctctaagaaattttgccagccaatgcgagtccaatgctgaatccatcccctgtgct
ggccatggtaaccaaataatttctgaatcagtgcgaggttag
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