KEGG T02983: 102618169

Citrus sinensis (Valencia orange): 102618169

Entry

102618169         CDS       T02983

Name

(RefSeq) DNA topoisomerase 3-alpha

K03165

DNA topoisomerase III [EC:5.6.2.1]

Organism

cit Citrus sinensis (Valencia orange)

Pathway

cit03440

Homologous recombination

cit03460

Fanconi anemia pathway

Brite

KEGG Orthology (KO) [BR:cit00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    102618169
   03460 Fanconi anemia pathway
    102618169
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cit03032]
    102618169
   03400 DNA repair and recombination proteins [BR:cit03400]
    102618169
Enzymes [BR:cit01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     102618169
DNA replication proteins [BR:cit03032]
Eukaryotic type
  DNA Topoisomerases
   102618169
DNA repair and recombination proteins [BR:cit03400]
Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     102618169
   FA (Fanconi anemia) pathway
     102618169

SSDB

Motif

Pfam:

Topoisom_bac Toprim Zn_ribbon_GRF Zn_ribbon_Top1 zf-CCHC Zn_ribbon_GRF_2

Other DBs

NCBI-GeneID:

102618169

NCBI-ProteinID:

XP_006465105

LinkDB

Position

7:join(22541735..22542121,22542730..22542908,22542994..22543066,22543640..22543759,22543855..22543976,22544059..22544131,22544229..22544345,22545059..22545142,22546953..22547132,22547249..22547377,22549081..22549155,22549344..22549433,22549580..22549684,22550379..22550413,22551220..22551349,22551615..22551667,22551738..22551828,22552326..22552364,22553171..22553249,22554106..22554177,22555077..22555148,22555406..22555570,22565241..22565361,22565780..22566011)

AA seq 940 aa
MNPSPLILTFFKSHTKEKPNKQKPFTSSTQMAGGGRPINVLNVAEKPSVAKSVAGILSKN
QGLRIREGRSRYNKIYEFNYSIRGQPCHMLMTSVTGHLMELDFDERYRKWHSCDPADLYH
APVRKHVPEDKKDIKKTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCRAVNCHLVLRR
ARFSALIDREIHQAVQNLVDPNQWFADAVDARQEIDLRIGASFTRFQTMLLKNFHIDSVT
DDRNLVLSYGPCQFPTLGFVVERYWEIQAHESEEFWTINCSHKSEEGTATFSWMRGHLFD
YTSAVIIYEMCVQEPTATVTKVRQQEKLKYPPYPLSTIELEKRASRYFRMSSEHTMKVAE
DLYQAGFISYPRTETDSFSSGTNLHGIVQEQIGHPDWGPYAQRLLDHAAGLWRNPGSGGH
DDKAHPPIHPTKFSSGESRWSQDHYKLYELVVRHFLACVSQPAVGAETIVEINIAGEVFS
TSGRVILAKNYLDVYRFESWGGLVIPTYVHGQQFIPTTLTLDSGVTRPPPLLSEADLLSC
MDKAGIGTDATMHDHIKKLLDRFYAIKDANTRFAPTNIGEALVMGYDDMGYELWKPNLRS
MMESDMKEVSVGNKSKADVLANCLQQMKACFLDARLKKVKLLEAMGIFFERSGGEDQQAA
GEVVRQCGICQESNMVLKKSRDGNLMVGCLAFPQCRNAVWLPGSVSEAAVTTNTCNSCTP
GPVYLIQFKFRQHEIPPGFNVNHLGCIGGCDETLRQLIEICGTGSRIPARGRGPTASSNN
GQQSNHRQRACIYCQQMGHSSSDCPSQFSGSRNARANGMNPQSGESSIQCTTCGTPCVLR
TANTANNRGRKFYSCSSQECNFFVWEDDAKNGTRRMPQAGVSGSASNPSQRGGRGRGGQS
RGHNTGMTFVSATGDPISGRRCYVCGEPSHFANACPNRGS

NT seq 2823 nt +upstreamnt +downstreamnt
atgaacccaagccccctcattttgacatttttcaaatcacatacaaaagaaaaaccaaac
aaacagaaacccttcacctcttcaacccaaatggccggcggtggccgtccaataaacgtg
ctgaacgtggccgagaagccttcggtggcgaagtcggtggccggcattctctcaaagaac
cagggcctccgcattcgtgaagggcggtcgcgctacaacaagatatacgagttcaattac
tcaattcgagggcagccatgtcacatgctgatgacctccgtcactggccatctgatggag
cttgatttcgacgaacgctaccgcaagtggcactcttgcgatcccgccgatctctatcac
gcccccgttcgtaagcatgtccccgaggacaaaaaggatattaagaagacattggaggag
gaagctaggaggtgtcagtggctagttttatggcttgattgtgacagagaaggagaaaac
attgcatttgaggtgattgaagtttgtagagcagtaaattgtcatctagtcttacggaga
gcacggttctctgctttgattgacagggaaattcatcaagcagtgcagaatcttgttgat
cctaatcagtggtttgctgatgctgtggatgctaggcaagaaattgatctccggattggt
gcttctttcaccaggttccagacaatgcttttgaaaaatttccatattgattctgttaca
gatgacagaaatcttgtcctaagttacggcccttgtcagtttcctacacttggctttgtc
gttgaacgttattgggaaatacaagcacatgaatcagaagagttttggacaatcaactgc
tctcacaaatcagaggaaggcactgctacttttagttggatgcgtgggcatctatttgat
tatacttctgcagttataatttatgaaatgtgtgttcaagaacccactgcaactgttaca
aaggttagacaacaggagaagttgaagtaccctccatatcctttaagtaccattgagctt
gagaaacgtgcttctcgttacttccgtatgagttctgaacataccatgaaggtagcagaa
gatctatatcaagctggtttcatcagctatcctcgtacagagactgacagcttttccagt
gggactaatttgcatggaattgtgcaagaacaaatagggcatcctgattggggaccatat
gcacagcggttgttggatcatgcagcagggctttggagaaatcctggtagtggtggacat
gatgacaaggcccatccacccatacaccctacaaaattttcttctggggaatctagatgg
agtcaggaccactataaattgtatgagctggttgttcgccattttctagcatgtgtctcg
cagccagcagtaggggctgaaactattgtcgaaattaatattgctggtgaagtattttcc
acatccgggagagtgatattagctaaaaattacttagatgtttaccgctttgaatcttgg
ggaggattggtgatcccgacttatgtccatggtcagcagttcatcccgacgacgctcact
cttgattccggagtcaccagaccgccaccacttcttagtgaagctgatttgctgagttgt
atggacaaggcaggcattggtacagatgcaacaatgcacgatcacataaaaaagctgctt
gatcggttttacgcaataaaggatgcaaatactcgctttgcgccaactaatattggagag
gcgctagttatgggctatgatgacatggggtatgaactctggaagccaaatctaagatca
atgatggaaagtgacatgaaagaagttagcgtaggcaataagagtaaagctgacgttctg
gcaaattgcttgcagcagatgaaagcttgctttttagatgcaaggctgaaaaaagtaaaa
ctcttagaagctatgggaattttctttgaaaggtcaggcggtgaagaccaacaggcggcg
ggagaagttgttcgtcaatgtgggatctgtcaggaatcaaatatggtgctcaagaaaagc
cgggatggaaatctcatggttggatgcttggctttcccacagtgcaggaatgctgtttgg
ctccctggatctgtatcagaagcagctgtgaccacaaacacttgcaactcttgcactcct
ggtcctgtttacctgattcagttcaagttccgtcagcatgaaatacctccgggcttcaat
gtcaatcatttgggctgtattggtggctgtgatgaaacgcttcgacaattgatagaaatc
tgtggaactggttcccgcattccagctagagggcgtggacccactgcttcatctaataat
ggccaacaaagtaaccataggcagcgtgcttgtatttactgccaacagatggggcattct
tcaagtgactgtccttctcagttttcaggctctcgaaatgctcgtgcgaatggaatgaac
ccacaaagtggagaatcatcaatacagtgtaccacatgtggaaccccatgtgtgctaaga
acagctaatacagcaaataataggggaagaaaattctactcgtgttcttcacaagagtgc
aacttctttgtatgggaagatgacgccaagaatggcaccagaagaatgccacaagcaggc
gtcagtggatcggcatccaatcctagccaaaggggtggccggggcagaggtggccaaagt
agaggacataatactggtatgacttttgtatcagcaactggcgatcctatttctggtaga
aggtgttatgtctgtggtgaaccatcacactttgcaaatgcatgcccaaaccgtggttcc
tga

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