Citrus sinensis (Valencia orange): 102618185
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Entry
102618185 CDS
T02983
Name
(RefSeq) phytochrome B isoform X1
KO
K12121
phytochrome B
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
102618185
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
HATPase_c
GAF
HisKA
PAS_4
PAS_9
PAS_3
PAS_8
Motif
Other DBs
NCBI-GeneID:
102618185
NCBI-ProteinID:
XP_006488839
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All DBs
Position
1:join(24054506..24056594,24057339..24058146,24058662..24058955,24060257..24060479)
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AA seq
1137 aa
AA seq
DB search
MASNSQHQQQHRRSQSAAQSSGTSNIRAHHNATESMTVSKAIAQYTVDARLHAVFEQSGE
SGKSFDYSQSVRTTSHSVPEQQISAYLSKIQRGGHIQPFGCTIAVDEATFRVIAYSENAG
EMLGLAPQSVPNLEKQEILTIGTDVRTLFTSSSSVLLEKAFGAREITLLNPIWIHSKNTG
KPFYAILHRVDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD
TVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASRFLFKQ
NRVRMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIIN
GNDEEAVGGRSTTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSE
KHVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTETQIKD
IVEWLLTYHGDSTGLSTDSLADAGYPKAATLGDAVCGMAVAYITKRDFLFWFRSHTAKEI
KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWDNAEMDAIHSLQLILRDSFRDA
EASNSKAVVNAQLVDLELQGVDELSSVAREMVRLIETATAPIFAVDVHGRVNGWNAKVAE
LTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLRTFGAENRKKAVF
VVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIHIQGDYKAIVHSPNPLIPPIFASD
ENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQD
TEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQALTVQRQQEKKC
FARLKELAYICQEIKNPLSGVSFTNSLLEATDLTEDQKQLLETSAACEKQMLKIIKDVDL
ESIEDGSLEFEKAEFLLGSVINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQ
QVLADFLLNMVRYSPSAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDM
FHSSRWMTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLIIFELPMPRRGSKSITD
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgaattcacagcaccagcagcagcatcgtagaagtcaatcagcagcacaatct
tcaggcacaagcaacataagagcccaccacaacgccacagaatcaatgacggtaagcaaa
gccattgctcagtacacagtggatgctcggcttcacgctgtgtttgaacagtcgggcgag
tccggtaagtcgtttgattactcacagtcagttagaacgacgagtcattcagttcctgag
cagcaaattagtgcttacttgtcgaaaattcaaaggggtggccatattcagccctttggt
tgtactatagctgttgatgaagccacttttcgagtcattgcttacagtgaaaacgcgggc
gaaatgttaggattagctccacaatctgtgcctaatcttgagaagcaagagattttaaca
attgggaccgacgtacgcacgcttttcacttcatcaagttcagttctgcttgaaaaagcc
tttggcgctagggaaattactttgttaaacccaatttggattcattcgaagaacacgggt
aaacccttttacgcgattttgcatagggtcgatgtagggatagttattgatttagagcct
gcaaggacagaggatcctgctctgtctattgctggagctgtgcagtcacagaaattggct
gtgcgcgcgatttctcaattgcaatcgcttcctggtggggatattaaattgttgtgtgat
actgttgttgagagtgtgagacagcttaccgggtacgacagggttatggtgtataggttt
catgaggatgaacatggtgaggttgtggctgagagtaaaaggcctgatttggagccttat
tttggattacattatccggctactgatattccgcaggcttcacggtttttattcaagcag
aatagggttaggatgattgttgattgtcacgccactccactttgtgtcattcaggatgaa
gggcttatgcaacctttgtgtttagtaggttcaacacttagggctccgcatggttgtcac
gctcagtatatggctaatatggggtcgattgcttcattggctttggctgttattattaat
ggaaacgatgaggaagctgttggtgggaggagcactacgaggctttgggggttggttgtt
tgccatcacacttctgcacggtgcattccatttccacttcgttatgcctgtgagttccta
atgcaagcttttggactccaactgaacatggaattgcaattagcttcacagttgtctgag
aagcatgttctgaggacccagactcttttgtgtgatatgcttcttcgtgactctcctgct
ggaattgttactcagagccctagtattatggaccttgtgaagtgtgatggggcagcactg
tactaccaaggaaaatattacccacttggtgtaaccccaactgaaacccagataaaggat
atagtggaatggctgctgacttaccatggagactcaactggtttaagcacagacagtttg
gctgatgctgggtaccctaaggcagccacacttggtgatgcagtttgtggaatggctgtt
gcctacatcactaaaagggattttctattctggttccggtcccacacagcaaaggagatc
aaatggggtggtgcaaaacatcacccagaggacaaggatgatgggcaaaggatgcatcca
cgttcttcattcaaggcatttctggaagtggtgaagagccgcagtttgccatgggataat
gcagaaatggatgcaattcattctttgcagctgattctgcgagactcatttagggacgct
gaagcaagcaattctaaggctgttgtaaatgcccagcttgtagatctagagttgcaaggg
gtggatgagctcagttcagttgccagggaaatggtaagattaatagagactgcaactgcc
cccatatttgctgttgatgttcatggccgtgtcaatgggtggaatgcaaaagttgcagag
ttgactgggctgtcagttgaggaagctatggggaagtccttggttcatgatcttgtttat
aaggaatatgaagaaatcgttgacaatcttcttcatcatgctttaaaaggtgaggaagac
aagaatgtagagataaaattgaggacatttggtgcagaaaatcgtaagaaggcggtcttt
gtggtggtcaatgcttgctccagcaaggattacacaaataatattgttggagtttgcttt
gtgggtcaggatgttaccgatcagaaattggtgatggacaaatttattcacatacaaggt
gattacaaggccattgttcacagtcccaatcctttgatccctcccatatttgcttcagat
gaaaacacttgttgctcggagtggaacactgccatggagaagctcactgggtggagtcga
ggagatattattgggaagatgttagttggggaggttttcggaagttgctgtcgtctcaag
ggtcctgatgctttgacaaaatttatgattgccttgcacaatgcatttggagggcaggac
acggagaagtttccttttcccttgtttgaccggaatggaaaatatgtgcaagcacttttg
actgccaacaaaagggtaaatatggaagggcagattgtaggagctttctgcttcttgcaa
attgctagtccagagttgcagcaagctcttacagttcagaggcaacaggaaaagaagtgc
tttgctaggttgaaagagttggcttacatttgccaggaaataaagaatccattgagtggt
gtgagctttactaactcactcttggaggccactgacttgacagaagatcagaaacagtta
cttgagacaagtgctgcctgtgagaagcagatgttgaagatcataaaggatgtggaccta
gaaagcattgaagatggttcattggagtttgagaaggctgaatttttactcgggagtgtc
ataaatgctgttgttagccaagtgatgatgttgctgagggaaagaaatcttcagttgatt
cgagatatcccagaggaaatcaagacactagctgtttatggtgatcaggcaagaattcag
caggtcttggctgactttttgttgaatatggtacgttattcaccatcagcagagggttgg
gtagagatccatgttcgtccaacattgaagcaaagttctgagggacaaaccattgtacat
aatgaattcaggatggtatgccctggtgaagggcttcctcctgagctggtgcaagacatg
ttccatagcagtcggtggatgacacaggagggcttagggctgagcatgtgccggaagatt
ctgaagctaatgaatggtgaagtccaatatatcagagagtccgaaagatgctatttctta
attatttttgaacttcccatgcctcggagaggctcaaagagtatcactgactag
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