Citrus sinensis (Valencia orange): 102618425
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Entry
102618425 CDS
T02983
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102618425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cit03041
]
102618425
Enzymes [BR:
cit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102618425
Spliceosome [BR:
cit03041
]
Complex C
Other components
Step II factors
102618425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
nSTAND3
ABC_tran
AAA_30
Sigma54_activ_2
T2SSE
TsaE
AAA_16
SRP54
PhoH
Helicase_RecD
DAP3
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
102618425
NCBI-ProteinID:
XP_006475709
LinkDB
All DBs
Position
1:5712407..5715235
Genome browser
AA seq
942 aa
AA seq
DB search
MALDNGIRELTYLSLLSKICSELETHLGFIDKVLAEFISESGRNSETVEIFDDKLKEYGA
DLPNYLVRTLFNVIHTILHPKPKLQSKKKSGRDRKTNYKAEFENDRERSGRYCKSNPPML
KDMPVSRMGGVSGVLASNEYPRYDEEEEEGFASWAEGDEEELEIELSEDQPAFLQGQTRV
SVDLSPVKVFKNPEGSLSRTAALQSALTKERREVREQQLRTMIDSIPKDLNRPWEDPMPE
TGERHLAQELRGVGLSARDMPEWKKNAYGKAFTFGQRSKLSIQEQRRSLPIFKLKNELIQ
AVHDNQVLILIGETGSGKTTQLAQYLAEAGYTTKGKIGCTQPRRVAATSVAKRVAEEFGC
RLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTINTDV
LFGLLKQLVKRRPDLRLIVTSATLDAERFSGYFFNCNIFSIPGRTFPVDINYSRQVVTDY
LDSALITVLQIHVDEPEGDILLFLTGQEEIDFACESLCEKIKALGKDVPELVVLPVYSAL
PSEIQSRIFEPAPPGGRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQRLDSLVI
TPISQASALQRAGRAGRTGPGKCYRLYTESAYRSEMSPTTIPEIQRINLVHTTLTMKAMG
INNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLAS
VDLGCSDEILTIIAMIQTGHIFTRPRERQAKADEKRARFFQPEGDHLTLLAVYEAWKAKN
FSLPWCGENFVNSRSLKKAQDVRKQLLAIMDKYKLGVVSAGKDFLKIRKAITSGFFFNAA
RKDPQEGYQTLVENQPVYIHPSSALFQRQPDWVIYNELVMTTKEYMREVIAIDPRWLADL
APKFFKVADPTKISKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggccttagacaacggcattagagaactaacgtatctttccctgctatctaaaatttgt
tccgagttagaaactcatctgggttttattgacaaagtattagccgagtttatctccgag
tcaggccgtaattctgaaaccgtagagatatttgatgataaattgaaagaatacggtgct
gatttgcctaattatcttgtccgcacgctgtttaatgtcattcataccattcttcatccc
aaacccaaattgcaatcaaagaaaaagagtggtcgtgatcggaaaacaaattataaggct
gagtttgagaatgatagagaaagaagtgggagatattgtaagagtaatccgccgatgttg
aaggatatgccggtgagtaggatgggaggagtttcaggggttttggcttccaatgagtac
cctaggtatgatgaggaagaagaggaggggtttgcttcttgggcagagggtgatgaggaa
gaacttgagattgaactgagtgaggatcagcctgcttttctacaggggcagaccagggtt
tctgtggatttgtcaccagtgaaggtcttcaaaaatcctgaggggtcattgagtcgtact
gctgcactccaatcagctcttacaaaggaaaggagagaagtgagggaacaacagctgagg
acaatgattgattccataccaaaggatctaaatcgtccttgggaggacccaatgccagag
actggtgagaggcatctagcacaggagctcaggggtgttggtttatctgctcgtgacatg
cctgaatggaagaagaatgcatacgggaaagcattcacttttggacaaaggtcaaagctc
tccatccaggaacagaggcggagcttgccaattttcaaattgaagaatgaactaatccag
gctgttcatgataaccaggtcctaatactcattggtgagactggttcaggtaagacaacc
caattggcacagtatcttgcagaggctggttacactacgaagggcaagattggatgtacc
cagccccgtagggtggctgcaacttctgtggccaagagggttgctgaagagtttggctgt
cgtttgggagaggaggttggttatgccattcgatttgaggattgtactggaccagatact
gtgatcaagtacatgactgatgggatgttgcttagggagattttgattgatgagaatctt
tctcagtattctgtcattatgctcgatgaagctcatgagaggacaatcaacactgatgtt
ctttttgggttacttaagcagcttgtgaaacggagacctgacctacgcctgattgtcaca
tctgccacgttggatgcagagagattttcgggatatttcttcaactgcaacatcttcagt
attccagggagaacatttccagttgatataaactactccagacaggtggtaactgattat
ctagattcagcattgatcacagtcttgcagatccacgtcgatgaacctgaaggtgatatt
cttcttttcttgacgggtcaagaggagatagattttgcatgtgagtcgctttgcgagaag
attaaagccctgggtaaagatgttcctgaactggttgttttaccagtttacagtgcgctg
ccaagtgaaattcaatcaagaatatttgaacctgcccctccaggggggaggaaagtggtt
gtggccactaacattgctgaggcttctttgactattgatgggatattttatgttattgat
cccggctttgcaaagcaaaatgtctataatccgaagcaaaggcttgattcactggtcata
actccaatttcacaagcatcagccctgcaacgagctgggcgtgctggccgtactgggcct
ggaaaatgttaccgcttgtacacagagagtgcatatcgcagtgagatgtcccctactaca
attccagaaatccaaaggattaatcttgtacatactaccctcactatgaaggctatggga
atcaataatctgctgtcttttgattttgtggatcctccatctccccaagctcttatttct
gccatggagcaattatacagtcttggagctctggatgaggagggacttctgactaaatta
ggtaagaaaatggcagaatttcccctagatccgccattatcaaagatgctgctagcaagt
gtagaccttggttgcagtgatgagatattaacgatcatcgccatgattcaaactggccat
atcttcaccagacccagggaaagacaggctaaagcagatgaaaaaagagccaggtttttc
cagcccgagggagatcatttgaccttgcttgcagtgtatgaggcttggaaagccaagaac
ttttctttgccttggtgtggtgagaactttgttaactctcgatctttgaagaaggcacag
gatgtgagaaagcaacttctggccatcatggataaatataagttgggcgttgtcagtgct
ggaaaagatttcctgaagataaggaaggccattacttctggattcttttttaatgcagct
agaaaggacccacaggagggctatcagactcttgtcgagaaccagccggtttatatccac
cctagcagtgctctttttcaaagacagcctgattgggtcatttacaacgagttggtaatg
acaacaaaggaatacatgcgcgaggtaatagctatagatccaaggtggcttgcagacttg
gcaccaaaattcttcaaggtggcagatcccacgaaaataagcaagcgcaagcgtcaagaa
cgcattgaaccgctatatgatagatatcatgaaccgaattcttggcggttgagtaaaagg
cgtgcatga
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