Citrus sinensis (Valencia orange): 102619030
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Entry
102619030 CDS
T02983
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102619030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cit03021
]
102619030
03041 Spliceosome [BR:
cit03041
]
102619030
03036 Chromosome and associated proteins [BR:
cit03036
]
102619030
Transcription machinery [BR:
cit03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
102619030
Spliceosome [BR:
cit03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102619030
Complex B
102619030
Complex C
U2 SnRNP specific factors
102619030
Chromosome and associated proteins [BR:
cit03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
102619030
TFTC complex
102619030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
102619030
NCBI-ProteinID:
XP_006486011
UniProt:
A0A067FKC9
LinkDB
All DBs
Position
4:join(3229559..3232570,3232809..3233300,3233571..3233708)
Genome browser
AA seq
1213 aa
AA seq
DB search
MYLYSLTLQQPTGIIAAINGNFSGTKTPEIVVARGKVLELLRPENSGRIETLVSTEIFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNPSKNVFDKIHQETFGKSGCRRIVPGQYL
AVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPI
FAAIELDYSEADQDSTGQAASEAQKNLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHRQKTLFFFLLQ
TEYGDIFKVTLEHDNEHVSELKIKYFDTIPVTASMCVLKSGYLFAASEFGNHALYQFQAI
GADPDVEASSSTLMETEEGFQPVFFQPRGLKNLVRIEQVESLMPIMDMRIANLFEEEAPQ
IFTLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLLEVEKHEMSGDVACLDIASVPEGRKRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFL
NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVVVGGRAAMLCLSSRPWLGYIH
RGRFLLTPLSYETLEYAASFSSDQCVEGVVSVAGNALRVFTIERLGETFNETALPLRYTP
RRFVLQPKKKLMVIIETDQGALTAEEREAAKKECFEAAGMGENGNGNMDQMENGDDENKY
DPLSDEQYGYPKAESDKWVSCIRVLDPRSANTTCLLELQDNEAAFSICTVNFHDKEHGTL
LAVGTAKGLQFWPKRNIVAGYIHIYRFVEEGKSLELLHKTQVEGIPLALCQFQGRLLAGI
GPVLRLYDLGKKRLLRKCENKLFPNTIVSINTYRDRIYVGDIQESFHFCKYRRDENQLYI
FADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLN
GAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSH
LEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLSLDLQRKIADELDRTPGE
ILKKLEEIRNKIV
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagtctcaccctccagcaacctaccggcataatagccgccattaacggc
aacttctccggcaccaaaacccccgaaatcgtcgtcgcccgcggcaaggtcctcgagctt
ctccgccccgaaaactccggcaggatcgaaaccctcgtctccaccgaaatctttggcgct
attcgctcccttgcccagttccgccttaccggctcgcaaaaagactacatcgtcgtcggt
tcggactcgggtcggatcgtaatccttgaatacaatccgtcaaagaatgtcttcgataaa
attcatcaagagactttcgggaagtcgggttgccgtcggatcgttccgggtcagtacttg
gccgttgaccccaagggtcgagccgttatgattggtgcttgtgaaaagcaaaaattagtt
tatgttttgaatagagacactgctgctaggttaacaatctcttcgcctttagaagcacat
aaatcacacacgatagtttattcaatatgcggaattgattgcgggtttgataaccctatt
ttcgctgccattgagttggattactctgaggctgaccaggattctactgggcaggctgca
agcgaggcacagaagaatttgacattttatgagctagatttagggcttaatcatgtttcc
aggaaatggtcagaaccagtggataatggggctaatatgttagttacggtgcctggagga
ggggatgggcctagtggagttttggtttgtgctgagaattttgttatttataagaatcag
ggtcatccggatgttagggctgtgattcctagacgagcggatttgccagccgaacgtggg
gttttgattgtttcagccgcgactcataggcagaaaacattgtttttctttttgttgcag
actgagtatggggatatatttaaggttactttggagcatgataatgagcatgttagtgag
ttgaagattaagtattttgatactattccggtgactgcatcaatgtgtgtgttgaagtca
gggtatttgtttgctgcttctgagtttgggaaccatgctttgtatcagtttcaagcaatt
ggggctgaccctgatgtagaggcctcatcttctacgttgatggagactgaagaaggattt
cagcccgtgttttttcagcctagagggttgaagaatcttgtgaggattgagcaagttgaa
agtctgatgccaataatggatatgaggattgcgaatttgtttgaggaggaagcgccccag
atatttacattatgtggacgtggtcctcgttcgtctcttaggatactgaggccaggtttg
gctgtgagtgagatggctgtgtcgcagcttcctggtgtcccaagtgctgtttggactgtg
aaaaagaatgttaatgatgagtttgacgcatacattgttgtttctttcaacaatgccact
cttgtgctttcaattggtgaaactgttgaagaagttagtgatagcgggtttcttgatacc
accccttcacttgctgtttcactaataggtgatgactctctgatgcaagttcatcccagt
ggtattaggcatattagggaagatggtcgtattaatgagtggagaactccaggaaagagg
acaattgttaaggttggttccaatagacttcaggtggttattgcactgagtggaggggag
cttatttacttcgaagtagatatgaccggacaactgttggaagtggagaagcatgaaatg
tctggagatgtggcatgtttggatattgcttcagttcctgaaggaaggaagagatcccgt
ttccttgctgtgggttcgtatgacaatacaatacgtatcttatcattggatcctgatgac
tgtatgcagatactgagtgtccaaagtgtgtcatcacctccagagtcgctccttttcctt
gaagtgcaggcatcggttggtggagaggatggtgctgatcatcctgctagtcttttcctc
aatgctggtttgcagaatggggttctgtttagaacagtggtagatatggtgacaggtcag
ctttcagattcgcgttccagattcttgggattgagacccccaaagctcttttctgttgtt
gtgggaggccgggctgcgatgctttgcttgtctagtcgaccatggcttggttatattcat
cgaggacggttccttttaacacctttatcttatgagactcttgaatacgctgcctcattt
tcatctgatcagtgtgtggagggtgttgtttctgttgctgggaatgcattgagggttttt
accattgagcgactaggagaaacctttaatgaaacagctcttcctttaaggtacacacca
agaagatttgttcttcaacctaagaagaaattgatggtaattattgagactgatcaagga
gcactcactgcggaagagcgtgaagctgcgaaaaaggagtgctttgaggctgctggaatg
ggggaaaatggaaatggtaatatggaccagatggagaatggtgacgatgagaataagtat
gatcccctctccgatgagcaatatggttatccgaaggcagaatcagacaagtgggtttct
tgcattagagttcttgatccaagatcagctaatactacttgcctactagaacttcaggac
aatgaggctgccttcagcatttgtactgtgaattttcatgataaggagcatggaactctc
ttggctgttggtacagctaagggactgcagttttggcccaaaagaaacattgttgctggt
tatattcatatttataggtttgtggaagaggggaaatcccttgaactactgcacaagaca
caagtagagggcattcctcttgctttatgccagtttcagggtagattacttgctggaata
ggccctgtgctgagattgtatgacttggggaagaagagattgcttagaaaatgtgagaat
aagctgtttcctaacactattgtctcaattaacacctatcgtgatcgaatctatgtaggt
gacatccaagagtcattccatttctgcaagtatagacgggatgagaatcaactctatatt
tttgctgacgattctgttccaagatggctcactgcagcacatcacatagattttgacacc
atggccggtgccgacaagtttggtaatatctattttgtgcgactaccacaggatgtttct
gatgagatagaagaagatccgactggtgggaagataaagtgggagcaggggaagcttaac
ggagctcccaacaagatggaggagatagtacagtttcatgttggtgatgtggtcacatcc
ttgcagaaggcatccctggttccaggtggtggggagagtgtcatttatggaacagtgatg
ggtagcttgggagctatgcttgcattttcatcccgtgatgacgttgacttcttttctcac
cttgagatgcatatgaggcaggaacatccacctttatgtggtcgtgatcacatggcttac
agatcagcttatttccctgttaaggacgtgattgatggggatctatgtgagcagttccca
accctgtctttagatttgcaaagaaaaattgccgatgaattggataggactcctggagag
atcctcaagaaacttgaagaaatcagaaacaagatcgtttga
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integrated database retrieval system
