KEGG   Citrus sinensis (Valencia orange): 102619998
Entry
102619998         CDS       T02983                                 
Name
(RefSeq) DNA repair protein RAD4 isoform X1
  KO
K10838  xeroderma pigmentosum group C-complementing protein
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    102619998
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cit03400]
    102619998
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      102619998
SSDB
Motif
Pfam: BHD_3 Rad4 BHD_1 BHD_2 Transglut_core
Other DBs
NCBI-GeneID: 102619998
NCBI-ProteinID: XP_006482096
LinkDB
Position
6:complement(join(22872065..22872457,22873119..22873328,22873806..22873958,22874052..22874246,22874348..22874684,22875378..22876151,22876410..22876459,22877039..22877140,22877240..22877332,22877611..22877703,22877816..22878130,22878387..22878490,22878611..22878670,22878789..22878834))
AA seq 974 aa
MRTRQDSKTQKDQASGKESTVRGALRDSESSHNETGTLAETSREGVGKFLRHVNARSSSR
SKKQDCAVGLTTSVLKVSGKQEVDKRVTWSDVDAHGCSRDAMGNTLRELDEGRLQDNVLD
GGEEMYDSDWEDGSIPVACSKENHPESDIKGVTIEFDAADSVTKKPVRRASAEDKELAEL
VHKVHLLCLLARGRLIDSVCDDPLIQASLLSLLPSYLLKISEVSKLTANALSPIVSWFHD
NFHVRSSVSTRRSFHSALAHALESREGTPEEIAALSVALFRALKLTTRFVSILDVASLKP
EADKNVSSNQDSSRVGGGIFNAPTLMVAKPEEVLASPVKSFSCDKKENVCETSSKGSPEY
KYSSPKSNNTQSKKSPVSRELSSRNLDPSSSMACSDISEACHPKEKSQALKRKGDLEFEM
QLEMALSATNVGTSKSNICSDVKDLNSNSSTVLPVKRLKKIESGESSTSCLGISTAVGSR
KVGAPLYWAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGA
KDVTRRYCMKWYRIASKRVNSAWWDAVLAPLRELESGATGGMTQMEMRHVNASNTLEALK
TSNYPYRDSFPNHVSLSGDSDLNVESSAKDSFVADRNSLEDMELETRALTEPLPTNQQAY
KNHQLYVIERWLNKYQILYPKGPILGFCSGHAVYPRSCVQTLKTKERWLQEALQVKATEV
PVKVIKNSSKSNRGQDFEPEDYDEVDARGNIELYGKWQLEPLRLPSAVNGIVPRNERGQV
DVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNGRSTPVFDGIVVCVEFKD
TILEAYAEEEEKREAEEKKRREAQATSRWYQLLSSIVTRQRLNNCYGNNSTSQSSSNFQN
VKKTNSNVGVDSSQNDWQSPNQIDKGDTKLHAPSPAQSEEHEHVYLIEDQSFDEENSVTT
KRCHCGFTIQVEEL
NT seq 2925 nt   +upstreamnt  +downstreamnt
atgcggaccagacaagattctaagacgcagaaagatcaagcttcagggaaggagagtaca
gttagaggggcactgcgtgattcagaaagtagccacaatgagactggaacacttgctgag
acatcacgagaaggagttggtaaatttcttagacatgtcaatgctcgtagctcatcacgt
agtaagaaacaagattgtgctgttggcttgactacgagtgtgttaaaagtaagtgggaaa
caagaggtggataaaagagttacttggagtgacgtagatgctcatgggtgtagcagagat
gcaatgggaaacacgttaagggagctcgatgagggaagacttcaggacaatgttttggat
ggtggggaggaaatgtacgattcagattgggaagatggatcaattcctgttgcatgttcc
aaagaaaatcatccagaaagtgacattaagggcgtcacgattgaatttgatgcagctgat
tctgttacaaagaagcctgttcgccgagcttctgcagaagataaggaattggctgagctc
gtgcacaaggttcatttactctgcttacttgcaaggggcaggttaattgattctgtttgc
gatgatcctcttattcaggcttctctactttctcttctgccatcatacttgttgaaaata
tccgaagtctcaaaactcacagccaatgccttatctcctattgtcagttggttccatgac
aactttcatgttagaagctcggttagtaccaggagatcatttcattcagctttggcccat
gctcttgaaagtcgtgaaggcactccggaggagatagcagcattatctgtggcattgttt
agagctttgaagctaacaacccgatttgtctccattttggatgttgcatccttgaaacct
gaggctgacaaaaatgtttcttcaaatcaagatagtagcagagtaggtgggggaatattc
aatgctccaacactcatggttgccaaaccagaagaggttttggcatctcctgttaaatca
ttttcatgcgacaaaaaggagaatgtatgcgaaacttcttcaaagggttcgcctgaatat
aagtatagcagtccaaaaagcaacaacactcaatctaaaaaatctcctgtttcccgtgag
ttaagtagtagaaatttggatccatcatcttccatggcatgtagtgatatctctgaagca
tgccatcctaaggaaaaatctcaggctttgaaaaggaaaggggatcttgagttcgagatg
cagttggaaatggctctttctgcaacaaatgttggcactagtaaaagcaacatatgttca
gatgtgaaggacttgaatagtaattcctcaactgtccttccagttaagagactgaaaaaa
attgaaagcggagaatcttcaacttcttgcctgggaatatctacagcagttggatcaaga
aaagtaggagctccactgtattgggcagaagtatactgcagtggtgagaacttgacagga
aaatgggtgcatgttgatgctgccaatgcaatcatcgatggggagcagaaggtagaagct
gcagcagctgcatgcaaaacatctttaagatatatagttgcttttgctggttgtggagct
aaagatgtgacccgcaggtactgtatgaagtggtacaggatagcgtcaaaacgagttaat
tctgcttggtgggatgcagttttggctccattgagggagttagagtcgggagcaactgga
ggtatgacccaaatggaaatgagacatgttaatgcctccaatacacttgaagcattgaaa
acatccaattacccgtatcgagatagtttccctaatcatgtcagcttgtctggggattca
gaccttaatgtagagtcttctgcaaaggattcttttgttgctgacaggaattctcttgag
gatatggagttggaaactagggcactaaccgagcctctgcctaccaatcaacaggcctat
aaaaaccatcaattatatgttattgaaaggtggcttaataagtatcagatactttatcca
aagggtcccattctgggtttctgttctggacatgccgtttatcctaggagttgtgtccaa
acactcaagacaaaagaaaggtggcttcaggaagcattacaggttaaagctactgaggtt
cctgtgaaggtaataaaaaattcttcaaaatccaacagaggacaagattttgaacctgag
gattatgatgaggttgatgctagaggaaatattgaactatatgggaagtggcaattggaa
ccattacgtctcccaagtgctgttaatgggattgtgccaaggaatgagcgtggtcaagtt
gacgtgtggtctgagaaatgccttccaccaggaacagtacacttaaggttgccaagggta
tattctgtggccaagagactggaaattgattctgcacctgccatggttggctttgaattc
agaaatggtcgctctactcctgtctttgatggtattgtggtgtgtgtcgagttcaaggat
acaatactagaggcatatgcagaagaagaggagaaaagagaagctgaggagaagaaaaga
agggaagcacaagctacttctaggtggtatcagcttctgtcatccattgtaactcgacaa
aggttaaacaactgctatgggaacaattcaacttcacaatcatccagcaatttccaaaac
gtgaagaaaactaattcaaatgttggggttgacagtagtcagaatgattggcaatctcca
aaccaaatagataaaggtgacactaaattgcatgctccttctcccgcccaatcagaggag
catgaacatgtgtatttgatagaggatcaaagttttgatgaggagaactctgtaacaacg
aagcgatgtcattgtggcttcacaatccaagtggaggagttatag

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