Citrus sinensis (Valencia orange): 102620951
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Entry
102620951 CDS
T02983
Name
(RefSeq) exosome complex component RRP41-like
KO
K12587
exosome complex component MTR3
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102620951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102620951
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
102620951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
102620951
NCBI-ProteinID:
XP_006488070
LinkDB
All DBs
Position
8:join(27280424..27280574,27281020..27281098,27281337..27281439,27281524..27281644,27282283..27282371,27282550..27282699,27282980..27283069)
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AA seq
260 aa
AA seq
DB search
MAAKPSTTTTAKATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA
SGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPVRGQGSDHKDFSS
MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVS
VSCLGKNLLIDPVLEEESYQDGSLMIACMPSRYEVTQLTVTGEWSTPHFNEAMQFCLDAS
AKLGKIMRSCLKEAASDEQE
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaaagcctagtactacaacaactgcaaaagccacgtactctccgattgaccct
accagaaaaactcgcccacccattttttctggctccgatgtggactggctccgacccgac
tcccgtggctttcaccagtgcagacccgcctttttccgcactggcgctgtgaattcagca
tcgggttctgcttatgctgaatttggaaacaccaaggtgattgtgtccgtatttgggcct
agagaaagtaagaaagcaatgatgtatagcaatataggtcgattgaattgtaatgttagc
tatacaacttttgctacccctgttcgtggacagggatcggaccacaaagatttttcctct
atgcttcacaaagctttggaaggtgcaataatattggaaacattccctaagacaaccgtg
gatgtatttgcattggttttggaatctggaggcagtgatctccctgtggtgatatcatgt
gctagtgtcgccctggcagatgcgggcattatgatgtatgacctcgttgcctctgtttct
gtgtcttgcctagggaagaatcttcttattgatccagtgctggaggaggaaagctaccaa
gacggaagtttaatgatagcttgtatgccttctcgttatgaagtcactcaattgacggtt
actggggaatggtcaacccctcattttaatgaggcaatgcagttttgcctcgatgcatct
gctaagcttggaaaaatcatgagatcatgcttgaaagaagcagcttctgacgagcaagaa
tag
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