Citrus sinensis (Valencia orange): 102621076
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Entry
102621076 CDS
T02983
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
102621076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cit03400
]
102621076
Enzymes [BR:
cit01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
102621076
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
102621076
DNA repair and recombination proteins [BR:
cit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
102621076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
NFACT_N
Motif
Other DBs
NCBI-GeneID:
102621076
NCBI-ProteinID:
XP_006492080
LinkDB
All DBs
Position
7:complement(join(12650710..12651135,12651222..12651256,12651534..12651636,12651885..12651962,12652483..12652533,12654167..12654292,12654393..12654461,12655486..12655543,12655911..12655962,12656363..12656591))
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AA seq
408 aa
AA seq
DB search
MPELPEVEAARRAIEEHCIGKKIVKSIIADDSKVIDGVSASDFEASVLGKAILSAHRKGK
NLWLRLDSPPFPSFQFGMTGAIYIKGVAVTQYKRSAVKDTDEWPSKYSKFFVELDDGLEL
SFTDKRRFAKVRLLNDPTSVPPISELGPDALLEPMTVDEFTDSLSKKKITLKALLLDQSY
ISGIGNWVADEVLYQAKIHPLQTAVSLSKESCATLLKCIKEVIEKALEVGADSSQFPSNW
IFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKLNGVQAAKAVGKPRKQAPKGEDS
KDDDKYNSGDESESDGEEIAENVKSKKRQKLGGQVKQPSPRKRKSKESDTEDDDGGNDDD
GGGSDDNAEEAPKTKSGKVTKNKQAKAVTTSKEKVISQKGKPSKKKAK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctaccagaggtggaggcggcgagaagggccatagaggagcattgcatcggt
aagaaaatcgtgaaatcgatcatcgccgacgacagcaaggtgatcgacggagtttctgcg
tcggatttcgaggcatcggttttgggcaaagccattttatctgctcataggaagggcaaa
aacttgtggctccgcctcgattcccctcctttcccttcctttcagttcggaatgactggt
gctatttacattaagggggttgctgttacacaatataagaggtcagctgtaaaggacact
gatgaatggccttccaaatattcaaagttctttgttgaactagatgatggtttggaactg
tctttcactgacaagaggcgatttgctaaagttcgcctgctcaatgatccaacttctgta
ccacctatatctgaacttggtcctgatgcattgctggagcccatgacagttgatgaattt
actgattcattaagcaaaaagaaaattacacttaaggctctattacttgatcagagttat
atttcaggaattggcaattgggttgctgatgaagttttataccaagccaaaattcatcca
ttgcaaactgctgttagcttatccaaagaaagctgtgcaactttactcaagtgcatcaaa
gaggtgattgaaaaagctcttgaagttggggcagatagtagtcaatttccaagtaattgg
atttttcattcccgtgaaaagaagcctggcaaggcttttgttgatgggaagaaaatcgat
tttattactgctggtggcaggacaacagcctatgtaccagagctgcaaaaactaaatgga
gtccaagctgcgaaagcagtgggtaaaccgaggaagcaagctcccaaaggagaagatagc
aaggatgatgacaaatacaatagcggtgatgagtcagaaagtgatggagaggaaattgct
gaaaatgtcaaatcaaagaaaaggcagaagcttggaggtcaagttaaacagccttcgccg
aggaaaagaaaatctaaagagagtgacaccgaagacgatgacggcggtaatgatgatgat
ggtggtggcagtgatgacaatgctgaggaagcaccgaaaacaaagtcaggaaaggttact
aaaaataaacaagcaaaggcagtgacgacgtcaaaggaaaaagttatcagtcaaaaaggt
aagccgtcaaagaagaaagcaaagtag
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