Citrus sinensis (Valencia orange): 102621281
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Entry
102621281 CDS
T02983
Name
(RefSeq) nuclear poly(A) polymerase 4-like isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102621281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102621281
Enzymes [BR:
cit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
102621281
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
102621281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
102621281
NCBI-ProteinID:
XP_006475996
LinkDB
All DBs
Position
1:complement(join(3588000..3588038,3588640..3588735,3588831..3589703,3589847..3590011,3590100..3590429,3590518..3590580,3590662..3590775,3591007..3591168,3591265..3591327,3591631..3591738,3591981..3592067,3592175..3592267))
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AA seq
730 aa
AA seq
DB search
MSGSLRYGINKPISVAEPTEADFQRNIELEKCCKFLIDSSLYASEEEDAKRKEVIGQLDQ
IVKAWVKQLTCQRGYTDQMVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDF
FIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSV
LNNVDEQTVRSLNGCRVADQILKHVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNW
ALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCPIEEDELGFSVWDPRKNPRDR
SHHMPIITPAYPCMNSSYNVSLSTLRVMTEQFQWGNRICEEIELNKAQWSALFEPYLFFE
AYKNYLQVDIVAADADDLLTWKGWVESRFRQLTLKIERDTNGLLQCHPYPNEYIDPSKPC
PNSAFFMGLRRKEGVTGKERQQFDIRGTVDNFREEIGMYMFWKPGMDIYVSHVRRRQLPS
FVFPDGYKRPRPSRHFNEQAGKPCEDVKMCQSGSSGRHLKREKEHEMEEVRPDKSVKRAS
ISSEVPQPVSPGKTTGDSTNDSEVMSAGGHLVSEKDTMAAHMQLDGIANHESVALNEQKC
TLVDDLSVINNESESSDLAEPSKPGLLGRCEIHSVDTVSSGSLLNVKGVAIKVDQELVKP
CNQMTVVEVAGREYESKSCTQNLSCEGDDCVASLDTLSENGCLNSCEVFHNSLTEELEVD
FEDNRMVCEM
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggttctttgaggtacggaatcaacaaaccaatctctgttgctgagcccaccgaa
gctgattttcaacgtaatatagaattggagaagtgttgcaagtttttgattgattccagt
ctgtacgcgagcgaagaagaagatgctaaaagaaaagaggttattggccaactggatcag
attgtaaaagcttgggttaagcaattgacttgccaaaggggatatacagatcagatggtg
gaggatgcaaatgctgtgatttttacttttgggtcttatcgcttgggggcacatggtcca
ggggcagatatagatgctttatgtgttgggccttcttatgtgagtcgtgaggaagatttc
ttcattatattgcatgatatactggctgaaatggaagaagttagtgaacttcaaccaatt
ccagatgctcatgttccagttatgaaattcaagttccagggaatctccattgatcttctt
tatgcaagtatttctcttctggttgttccagaagacatagacatttcgcaaatgtctgtg
cttaataatgttgatgagcaaactgttcgaagtcttaatggatgcagggttgcggatcaa
attctcaaacacgttccaaacgttgagcactttcgcatgacgctcagatgtctgaagttc
tgggctaaaaggcgtggcgtttattcaaacgttactggattccttggtggtgtaaattgg
gctcttctggttgcacgcgtgtgccaactttatcccaatgcaattcctagtatgctagtt
tctcgtttttttagagtgtatacacagtggcgttggccaaaccctgtcatgctgtgtcca
atagaagaggatgaactagggttctcagtgtgggatcctcgtaaaaatccccgggaccga
tctcatcatatgcctataataactccagcatatccttgtatgaactctagttataatgtc
tctttaagtactcttcgagtgatgacggagcagttccagtggggtaacaggatctgtgag
gaaattgagctgaacaaggcccagtggagtgctctattcgagccttatcttttctttgag
gcatacaagaactatctgcaggttgatattgttgcagcagatgctgatgatttactaact
tggaaagggtgggtggagtctcggtttagacaacttaccttgaagatagagcgagataca
aatgggttgctgcaatgccatccttatcctaatgaatacatagacccatccaaaccatgc
ccaaattctgccttttttatgggcttgcgtaggaaagagggagtcactggtaaagaacgc
cagcagtttgatattagaggaacggttgacaatttcagagaagagattggcatgtatatg
ttttggaaaccagggatggatatttatgtttctcacgtacgcagaaggcagctcccttcc
tttgttttccctgatggttataaacggcctcgaccatcaagacacttcaatgagcaggct
ggaaagccttgtgaagatgtcaaaatgtgccagtctggttcttctggaagacatcttaag
agagaaaaagaacatgaaatggaggaggtgaggccagacaaaagtgttaaacgggcctct
attagttcagaagtaccacagcctgtttctccaggaaagacaactggggattcaactaac
gattctgaggttatgtcagctggtgggcatttggtgagtgaaaaagataccatggcagcc
cacatgcaattggatggaattgctaatcatgaatcagttgccttaaatgaacagaaatgt
acgcttgtagatgatttgtctgtcattaacaatgaatcagaatcatctgacttggcggaa
ccttctaaaccagggttgcttggtcggtgtgaaattcatagtgtagatactgtatcctcc
gggagtctgttaaatgtgaaaggagtggccattaaggtagatcaagaattagtcaaacca
tgtaatcagatgactgttgtagaagttgctggtagggaatatgagtcaaagtcttgcact
cagaacctcagttgcgagggtgatgactgtgttgctagtttggatactctttcggaaaat
ggatgtctaaattcctgtgaggtctttcacaacagcttgacagaggaattagaggttgac
ttcgaagacaacagaatggtgtgtgagatgtga
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