KEGG   Citrus sinensis (Valencia orange): 102621344
Entry
102621344         CDS       T02983                                 
Name
(RefSeq) uncharacterized protein LOC102621344 isoform X1
  KO
K20178  vacuolar protein sorting-associated protein 8
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:cit00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    102621344
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cit04131]
    102621344
Membrane trafficking [BR:cit04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    102621344
SSDB
Motif
Pfam: TPR_Vps8 Beta-prop_VPS8 VPS8_N TPR_Vps41 Clathrin TPR_VPS8_2 Beta-prop_WDR36-Utp21_1st Beta-prop_EML_2 Beta-prop_EML WDR55 Beta-prop_WDR5 Beta-prop_HPS5 WD40 Beta-prop_WDR3_1st Beta-prop_RIG_2nd WD40_WDHD1_1st WD40_CDC20-Fz ANAPC4_WD40 WD40_Gbeta WD40_Prp19 Beta-prop_TEP1_2nd zf_RING_Vps8 Beta-prop_THOC3 zf-RING_2 zf-RING_Vps41
Other DBs
NCBI-GeneID: 102621344
NCBI-ProteinID: XP_006491365
LinkDB
Position
3:complement(join(47230331..47230356,47230446..47230689,47230778..47231185,47231488..47231818,47232377..47232486,47232591..47232878,47233234..47233540,47233639..47233829,47233939..47234603,47234946..47235001,47235561..47235703,47235809..47235910,47236009..47236073,47236472..47237105,47237259..47237416,47237481..47237601,47237720..47237959,47238102..47238413,47239639..47241090))
AA seq 1950 aa
MTKELQDTKSLMELDVDSFLNSHLSSDSDDEFNSVPHRTLDEILNDSESSTSPSSPTSSI
HHSDTSLAKPQPQGDGVSSQDKPTPKPGSFHRVKSNELSGDPIWRVPPSSSRQLPSLFGG
VRSTAKPGAALAAAAAASRSVPTPHAAAIKSRRAGSGTLLKVLDGDDHEIASVSSNEISV
SSEKLEGDAELIGDFQSAQVNVSGELSSLASSRDVDTKLESEVSNVDDEFLNTSSNLNTG
QLIGCSPRVVVKDLNLREKSIIASSDDANDIDGNRIVAPVTADDDSMFLEVNASTESSVV
PLNESDRTGLMEENLEIPTLEMESSDKSMSTSQDDEVGVDGSNDASSIDDISELVEERIG
QLESEITSRRAEKKVQPSLKPLELAEELEKKQASTGLHWKEGAAAQPMRLEGVRRGSTTL
GYFDVDANNTITQTIASQAFRRDHGSPQVLAVHPSFIAVGMSKGAIVVVPSKYSAHHRDS
MDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTS
PVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVL
SASPLLFDESCGGAPLSSQGNSTASASSIGSMMGGVVGSDTGWKLFNEGSSLVEEGVVIF
VTYQTALVVRLTPTLEVYAQIPRPDGVREGAMPYTAWKCMTTCRSSTTESIPTEAAERVS
LLAIAWDRKVQVAKLVKSELKVYGKWSLDSAAIGVAWLDDQMLVVLTLLGQLYLYARDGT
VIHQTSFAVDGSQGYDLVGYRSYFTNVFGNPEKSYHNCVSVRGASIYVLGPMHLVVSRLL
PWKERIQVLRKAGDWMGALNMAMTLYDGQAHGVIDLPRTLDAVQEAIMPYLVELLLSYVD
EVFSYISVAFCNQIEKLAQLNNPQSRSSTVHAEIKEQFTRVGGVAVEFCVHINRTDILFD
DIFSKFEAVQHRDTFLELLEPYILKDMLGSLPPEIMQALVEHYSSKGWLQRVEQCVLHMD
ISSLDFNQVVRLCREHGLHGALVYLFNKGLDDFRAPLEELLVVLRNSERESAYALGYRML
VYLKYCFKGLAFPPGHGTLPSTRLPSLRAELVQFLLEESDAQNSQAASSLLLKGSYLNLY
HLLELDTEATLDVLRCAFIEVETPKSDFYACDMADTNAEPNNGNKMVAEYQNMLVQNTVN
ALVHILDEDISSTDGSASKDDSGSVEAWPSTKDIGHIFEFIACYVASGRATVSKSVLSQI
LQYLTSEKNVPQSILSHIETSKRREKQLLALLEAVPETDWNASEVLHLCENAHFYQVCGL
IHTIRYNYLAALDSYMKDVDEPICAFSFIHDTLLQLTDNEYTAFHSAVISRIPELICLSR
EATFFLVIDQFNDEASHILSELRSHPKSLFLYLKTVVEVHLHGTLNLSYLRKDDTLDVAN
CKWVKYQSKGLGAYIERISDLPKFLSSNAVHVTDDMIELYLELLCRYERDSVLKFLETFD
SYRVEYCLRLCQEYGITDAAAFLLERVGDVGSALLLTLSELNDKFAALETAVGSALPIAV
SNGSVSVEHFSTVLNMEEVNDVNNILRACIGLCQRNTPRLNPEESEVLWFKLLDSFCEPL
MGSFVERASERENHSRMLEESFGSQEDAEACIIKWRISKSHRGSHILRKLFSQFIKEIVE
GMIGYVHLPTIMSKLLSDNGSQEFGDFKLTILGMLGTYSFERRILDTAKSLIEDDTFYTM
SVLKKEASHGYAPRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNL
SGCPLCMPKKNTQRSRNKTVLAESGLVSKFSSRPQQSLGTTLHSHESDTSDYSNGIQQLS
RFEILNNLRKDQRVVQIENMPQLRLAPPAIYHEKVKKGTDLLMGESSRGLLETEKASKNR
PLRELKLKGSSSLRFPLRSSIFGKEKRSRR
NT seq 5853 nt   +upstreamnt  +downstreamnt
atgaccaaagagctccaggacacaaagtcactaatggaactcgatgttgactcgttcctt
aactcgcatctctcctccgattctgatgacgagttcaactcagtcccccatcgtaccctt
gacgaaatcctcaacgactccgagtcctctacgtcgccttcatcgccaacatcgtcaatt
caccactcagatacctcccttgccaaaccacagccccaaggtgacggcgtttcatctcaa
gataaacccactccaaaacctggttcatttcatcgggtcaaaagtaacgaattatcgggc
gatcccatatggagggttcctccgtcatcttcgagacaattgccgtcgctgtttggtgga
gtgagatcgactgccaagcctggggcggcactcgctgctgctgctgcggcgtcgaggtcg
gtcccgactccccatgcggcggcgataaagtcgcggagggcggggagtggaacgcttctg
aaagttctcgacggtgatgatcacgagattgcttccgtttcctcgaatgaaattagcgtg
tcgagcgagaaattggagggagatgcggagctaataggtgattttcagtctgctcaagtg
aatgttagtggtgaattgtcgagtttggctagtagtagagatgtagatactaaattagaa
tccgaggttagtaatgttgatgatgaatttttaaatactagttctaatttgaatactggc
caactaattggttgctctccgcgagttgttgtgaaggatctgaatttgagagaaaaatct
ataattgctagttcagatgacgctaatgatattgatggaaatagaattgttgcccctgtt
acagctgatgatgattccatgttcttggaagtgaatgcttctaccgagagtagtgttgtt
cctctaaatgaatctgaccggactggactaatggaggaaaatttggaaattcctacattg
gagatggagagttcggacaagagtatgtccacctctcaagatgatgaggttggagtagat
ggtagtaatgatgccagttcgatagatgacatttcagagcttgtggaggagagaattggg
caattggagagtgagattactagtagaagagctgaaaaaaaagtgcagccctccttgaag
cctcttgaattggctgaggaacttgagaaaaagcaggcatcaactggcttgcattggaag
gagggtgcggctgcccagcccatgaggcttgagggtgttcgaagaggttcaactacattg
ggatattttgatgttgatgctaataacactattacacagactattgcatcccaggcattt
aggcgtgatcatggttccccacaagtcttggcagtgcatcctagttttatagctgttgga
atgtccaaaggtgccattgttgttgtgcccagtaaatactctgctcatcatcgtgacagc
atggattcaaagatgatgatgcttggtttgctaggggatcgatctcctgccccagtaact
gccatgtgcttcaatcagccaggagatctgctcttagctggttatgctgatggtcatgtt
acagtttgggatgtgcagagggcatctgcagcgaaagttattactggagagcacacctca
ccagttgtacatacattattcctagggcaggattctcaagttactcgtcagtttaaagca
gttactggtgatactaaaggtcttgttcagttacattctttatctgtggttcccttgctg
aataggttctctatcaagacacagtgtctccttgatggacaaaaaacgggcattgtacta
tcagcttcacctcttcttttcgatgaatcttgtggaggtgctccgctatcctctcaagga
aattccactgcttcagccagtagtattggtagcatgatgggaggggtagttgggtcagat
acaggttggaaactgttcaatgaagggtcttctttggttgaagaaggtgtggtcatattc
gtcacctatcaaactgcactggtggtaagacttactcccacattagaagtctatgcacaa
attcctaggcccgatggggtccgagagggtgctatgccttacactgcttggaaatgcatg
acaacatgtcgaagttctacaacagaaagtattcccactgaagcagcagagagagtttca
ttgcttgcaattgcttgggatcggaaagttcaggttgcaaagttggtcaaatcagagctt
aaagtatatgggaagtggtcccttgacagtgcagccattggtgtggcctggttggatgat
cagatgctggtggttcttacactgttgggacagctatatttgtacgcaagagatggaact
gtaattcatcaaactagttttgcagttgatggatctcaaggatatgatcttgttggatat
cgtagctactttactaatgtttttgggaaccctgagaaatcctatcataattgcgtaagc
gtaagaggagcttccatatatgtactcggacctatgcatcttgttgtttcccgacttctt
ccttggaaggaacgaattcaggttctgcggaaagcaggtgactggatgggtgccttgaac
atggctatgacactttatgatggacaagctcatggtgttatcgaccttcccagaacccta
gatgctgttcaggaggccataatgccttatctggttgagttgctactatcatatgtagat
gaagtattttcatatatttcagtggcattttgcaaccaaattgagaaactggcacaactt
aacaatccacaaagtagaagcagtactgttcacgctgaaattaaagagcagttcacccgt
gttggtggtgtagctgttgaattctgtgtccatatcaataggactgacatacttttcgat
gacattttctccaaatttgaggctgttcaacatagagacacatttctggagcttttggag
ccatatattttgaaggacatgcttggatctctcccccccgagataatgcaagctctggta
gagcattatagctccaagggatggttgcagcgagttgagcaatgtgtccttcatatggac
atttcttctttggacttcaatcaggttgtcaggttatgccgagagcatggactccatggt
gctttagtgtatctttttaacaaaggattggatgatttccgtgcccctttagaagagctg
ttggtagttctacgtaatagtgaaagagaaagtgcttatgcccttggttacaggatgctt
gtatatctcaagtattgcttcaaaggtcttgcttttccaccaggtcatggaactcttcct
tccacacgcttgccatctcttagagcagaacttgtgcagtttcttttggaggaatctgat
gcccagaattcacaagcagcttcaagcttattgctgaaaggatcatatctgaatctgtat
catctcttggaattggacactgaagctactttagatgttctgagatgtgctttcatagaa
gttgagacgccaaaatctgacttttatgcatgtgatatggctgacacaaatgcggagcct
aacaacggaaacaagatggtggctgaatatcagaatatgctggttcagaatactgtaaat
gctcttgtgcatattcttgatgaggatatctcttcaacagatggatctgctagcaaggat
gatagtggatcagtagaagcttggccatctacgaaggacataggtcacatatttgagttc
attgcatgctatgttgcatctggaagagctactgtctcaaaaagtgtactgagtcagatt
ctacagtacttgacatcagaaaagaatgtcccacaaagtattctatcacatattgaaact
tctaaaagaagagaaaagcagcttctagcgcttctggaagcagtgccggagactgattgg
aatgcatctgaagtgttacatctatgtgagaatgcccatttttatcaggtttgtggttta
attcataccatcagatataactatcttgctgctctggatagctacatgaaagatgtcgat
gaacctatttgtgccttttctttcatccatgatacattactacaactgactgacaatgaa
tatactgctttccactcagcagtcatctcccggattccagagctgatttgcttaagccga
gaggcaacattcttcttagtcattgaccaattcaatgatgaagcttcacatatcctctct
gaacttcgctctcatccaaaaagtcttttcctttatttgaagacggttgttgaggttcac
ttgcatggaaccctcaacttatcttatttaagaaaagatgatacgctggatgttgctaat
tgtaaatgggtgaagtatcagtcaaaaggattgggggcttacattgaaagaatttctgac
ctccctaaattcctgtctagtaacgcagttcatgtgactgatgatatgattgagctttac
ttggagttattatgtcggtatgaacgagattcagttctcaaattcttagaaacttttgat
agctatcgggtggaatactgtttacgcctgtgccaagagtatggaatcacagatgcagct
gcatttttattagaaagggttggagatgtgggaagtgctctcttacttacactatctgaa
cttaatgataagtttgctgcgcttgagactgctgtgggaagtgcccttcctatagcagtt
tctaatggatcagtcagtgtagagcatttcagcactgttttaaatatggaggaggtcaat
gatgtaaataatatattgcgtgcctgtattgggttgtgccagcggaacactcctcgtctg
aatccagaagagtcagaagtgctctggtttaaattacttgattcgttttgtgagccttta
atgggttcatttgttgaaagggcatctgaaagagaaaatcattccagaatgctagaggaa
tcatttggctcacaagaggatgcagaggcatgcattatcaagtggagaatttcaaaatcc
cataggggttctcatattttgaggaaattgttttctcagttcatcaaagagattgttgaa
ggaatgataggatatgttcatcttccaaccataatgtcaaaactcctgtctgataatggt
agccaggaatttggtgactttaaacttaccatattgggaatgctgggaacgtacagtttt
gaaagaagaattctggatactgccaaatctttaatagaggatgatacattctataccatg
agtgtgctcaagaaggaggcctctcatgggtatgcccccaggagtttactatgttgtata
tgtaattgtcttctcacgaagaattcctctagttttcaaattagagtgttcaattgtggt
catgcaactcatattcaatgtgaactgttggaaaatgaatcatcaagcaaaagtaactta
tctggatgcccactttgtatgcccaagaagaatactcagagatcgagaaacaaaacagtt
cttgcagagagtggtttagtaagtaagttttcatcaagaccgcaacaatcattaggaact
acactgcactcacatgaaagtgatacatcagactattccaatggaattcagcaactatca
cggtttgaaatcctgaacaatcttcgaaaggaccagagagtagtccagatagaaaatatg
cctcagttaaggcttgcaccaccagccatttatcatgaaaaggtgaagaagggaactgat
cttttaatgggagaaagtagtcgtggtcttctagaaacagaaaaagcgagtaaaaacagg
ccactgagagagctgaaattgaagggatcatcatctcttcggtttcctttaagatcaagt
atatttggcaaggagaagagaagcagaaggtga

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