KEGG   Citrus sinensis (Valencia orange): 102621370
Entry
102621370         CDS       T02983                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03020  RNA polymerase
cit03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    102621370
  09124 Replication and repair
   03420 Nucleotide excision repair
    102621370
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cit03021]
    102621370
   03400 DNA repair and recombination proteins [BR:cit03400]
    102621370
Transcription machinery [BR:cit03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     102621370
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      102621370
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 102621370
NCBI-ProteinID: XP_006494738
LinkDB
Position
7:join(27274526..27274574,27274669..27274777,27275240..27275317,27276342..27276375,27276469..27276537,27276806..27276883)
AA seq 138 aa
MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ
YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD
DEAIEKMLNDLSLIKKFE
NT seq 417 nt   +upstreamnt  +downstreamnt
atgtctggagaagaagaagagaacgcggccgagcttaaaattggagacgagtttttgaag
gccaagtgtttgatgaattgtgaagtagcaataattcttgatcacaagtatgagcagctt
cagcagacttctgatgatcccatgaatcaagtttcccaagtgtttgagaaatcactgcag
tatgtgaagcgctttagtcgctacaagaatcctgatgctgttagacaagtgcgagaaatc
cttagtagataccagttggctgaattcgagctgtgtgtacttggaaatctttgccctgag
accgtggaggaagccattgctatggtaccttctataaagaccaggggacgagctcacgat
gacgaggcaattgagaaaatgttgaatgacttgtcactgataaagaaatttgagtaa

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