KEGG   Citrus sinensis (Valencia orange): 102621673
Entry
102621673         CDS       T02983                                 
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03022  Basal transcription factors
cit03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    102621673
  09124 Replication and repair
   03420 Nucleotide excision repair
    102621673
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cit03021]
    102621673
   03400 DNA repair and recombination proteins [BR:cit03400]
    102621673
Enzymes [BR:cit01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     102621673
Transcription machinery [BR:cit03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     102621673
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     102621673
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C SNF2-rel_dom
Other DBs
NCBI-GeneID: 102621673
NCBI-ProteinID: XP_052294151
LinkDB
Position
3:complement(join(1649746..1649836,1649971..1650113,1650187..1650270,1650875..1650934,1651087..1651167,1651494..1651607,1651767..1651839,1651920..1652083,1652342..1652535,1652627..1652702,1652805..1653142,1653516..1653603,1653736..1653816,1654277..1654420,1654643..1654699,1654781..1655003,1655092..1655260,1655372..1655447,1655526..1655569,1655660..1655687))
AA seq 775 aa
MDHHKSHHRGDKGRPSKKPKFSNKDDHSSKFVDDDDAYYNEDAEDDYRDGEKEERKRDFS
KLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSL
YAAVSVGLETETIISVLNKLSKTKLPKEMIDFIHASTANYGKVKLVLKKNRYLVESPFPE
VLKRLLQDDVISRARIVSENLHGSDGFTVSKAAGEIATGHDGLLNEAELAAAAEEKETHS
FEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKM
FGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDD
QICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV
PAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQ
CAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADN
LFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVII
QISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQ
FLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA
LHKARRIAGSMSAMSGAQGMVYMEYSTGQKKLGLGQKGKPKDPSKRHYLFKRRFG
NT seq 2328 nt   +upstreamnt  +downstreamnt
atggatcaccataaaagccaccaccgcggcgacaagggccgacctagcaaaaagcctaaa
ttttctaataaggatgatcacagtagtaaatttgtggatgacgatgatgcctattacaat
gaagatgctgaggatgattatcgtgatggtgagaaagaagagagaaaacgtgattttagc
aaactagaactgaaacctgatcatgctaatcggcctctgtgggcttgtgctgatggacga
atatttcttgaaacattctctccattatacaaacaagcatatgattttctcattgctata
gctgaaccagtttgcaggccggagtctatgcatgagtataatttgactccgcattcatta
tatgcggctgtgtcagtgggactggagactgagactatcatttctgtattgaataagttg
tcgaaaacgaaattaccaaaggaaatgattgatttcattcatgcttcaacggctaattat
ggaaaagtcaagcttgtgcttaagaagaatcggtatttagttgaatcaccatttccagag
gtcttgaagaggttgcttcaagatgatgttatatctcgggcaaggattgtttctgagaat
ctacatggaagtgatggatttacagtcagcaaggctgctggtgaaattgcaactggtcac
gacgggttgctaaatgaagcagaattggcggctgctgcggaagagaaagaaactcattca
tttgagattgatccttcccaggttgagaatgtaaaacaacgttgcttgccaaatgcttta
aattatccaatgttggaggagtatgatttcagaaatgataatgtcaaccctgatcttaat
atggaactgaagcctcatgctcaaccacgaccatatcaagaaaagagcctcagtaaaatg
tttggaaatggtagggcaagatctggcattattgtgcttccttgtggtgctggaaagtct
ctagttggtgtctcggcagcatgccgcataaagaagagttgtctttgtttagcaacaaat
gctgtttctgtggatcaatgggcctttcaattcaaattatggtctaccatacaagatgat
caaatttgtcgttttacttctgatagcaaagaaagatttcgtggcaatgctggggtggtt
gtgacaacatataatatggttgcctttggtggtaaaaggtctgaagaatctgaaaagatt
attgaagaaattagaaatagagaatggggattgttgctcatggatgaggttcatgtggtt
cctgctcatatgtttcgtaaagttatcagccttactaaatcacactgcaaacttgggctt
actgctacacttgtgagagaggatgaaagaattacagatttgaatttccttattggccca
aaattgtatgaagcaaactggttggatctagttaaaggaggatttattgcaaatgtacag
tgtgctgaggtatggtgtcctatgacgaaggaattcttctctgaatatttgaagaaagaa
aactccaagaaaaagcaggcactttatgtgatgaaccctaacaagttcagggcgtgtgaa
tttctcatacggttccatgaacagcagcgcggcgataagataattgtttttgcggacaat
ctatttgcactcacggagtatgctatgaaacttcgcaaacccatgatctatggtgctacc
agccatgttgagaggacaaagattcttcaggctttcaaatgtagtcgagatttgaatact
atctttctttcaaaggtgggtgacaactcgattgatatccctgaggctaatgtgatcatc
cagatttcgtctcatgctggatcaagacgtcaagaggctcaacgtctgggtcgtattctt
agggcaaagggtaaactagaagatagaatggcaggaggtaaagaggagtacaacgcattt
ttctattccctcgtttctacagatactcaggagatgttctactcaactaagagacagcag
tttctgattgatcaaggttatagctttaaggtaataacaagtttgcctccccctgattcg
ggtgctgatttgagctaccaccgtctggatgagcaactggcacttcttggcaaggttttg
agtgccggtgatgatgctgtgggtctagagcaattagatgaagatgctgatgacattgcc
ctccataaagcccgtcgcattgcaggatccatgagtgcgatgtcaggtgcacaggggatg
gtttacatggaatacagcactgggcagaagaaacttggtctgggccagaagggcaagcct
aaggatccatccaagcggcattatttgtttaaaagacgcttcgggtga

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