KEGG   Citrus sinensis (Valencia orange): 102621716
Entry
102621716         CDS       T02983                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102621716
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102621716
   03041 Spliceosome [BR:cit03041]
    102621716
   03009 Ribosome biogenesis [BR:cit03009]
    102621716
   03016 Transfer RNA biogenesis [BR:cit03016]
    102621716
Enzymes [BR:cit01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     102621716
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     102621716
Spliceosome [BR:cit03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    102621716
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    102621716
Ribosome biogenesis [BR:cit03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    102621716
Transfer RNA biogenesis [BR:cit03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    102621716
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk DEXQc_Suv3 ResIII Helicase_C ATPase_2
Other DBs
NCBI-GeneID: 102621716
NCBI-ProteinID: XP_006487272
LinkDB
Position
8:complement(join(6919701..6919979,6920887..6921151,6921727..6921959,6922039..6922182,6922692..6922846,6922930..6923215,6924170..6924293,6924657..6924907,6925358..6925468,6926139..6926243,6927617..6927955,6928036..6928254,6928335..6928535,6928789..6929067))
AA seq 996 aa
MASLKRKSIMEDSYETPQPMQNSNGNGTMIVNDDEPVACLHDVSFPPGYVPSSSSTGAAA
AEADAKPAKEFPFTLDPFQSEAIKCLNNGESVMVSAHTSAGKTVVALFAIAMSLRNKQRV
IYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITRE
VAWVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCH
IVYTDYRPTPLQHYIFPAGGSGLYLVVDEKGKFREDSFHKALNALVPAGEGEKKRENGKR
HKGLVAGKLGEESDIFKMVKMIIQRQYDPVIIFSFSKRECEFLAMQMAKLDLTEDDEKVN
IETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVTEILFQEGLIKCL
FATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMV
DDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIP
DLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFSPKYCLPFLQPGRF
VCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVV
SKDGAGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSE
FLARNASGLPLDPEANMGIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQ
ELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSAEEL
TLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQ
LECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQ
LILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL
NT seq 2991 nt   +upstreamnt  +downstreamnt
atggcatcgttgaagagaaagtcaataatggaagactcgtacgagactcctcaaccaatg
cagaattcgaacggcaacgggacaatgattgttaacgacgatgagccagttgcatgtcta
cacgacgtgtcgtttccccccggttacgtgccttcttcttcttcaactggagcagctgcc
gctgaagctgacgccaaacctgctaaggaattccctttcactctcgacccattccagtcc
gaagctatcaagtgcctcaacaacggcgagtccgttatggtatcggcccatacatctgct
gggaagactgtggtagcattgtttgctattgctatgtcgttgcggaataagcaacgtgtg
atatatacttcaccgattaaggcactcagcaatcagaagtacagggagtttaaagaagag
ttttcagatgtcggtttgatgactggggatgtcacaattgaccctaatgcttcttgtttg
gtgatgactactgaaatctggcgtagtatgcagtacaaaggctcagagattacgcgtgaa
gtggcttgggttatatttgatgaggtacattacatgcgtgatcgtgagagaggtgtggta
tgggaagagagcattgtgatggctccaaagaactcccgatttgtgttcctctccgctact
gtgcccaatgcaaaggagtttgctgattgggttgcaaaggttcaccagcaaccatgtcat
attgtttatactgattatcgcccaacaccccttcaacactacattttccctgctggtggt
agtggactatacttggtggtggatgaaaagggtaaatttcgtgaggacagctttcacaaa
gctttaaatgcactagttcctgctggtgagggtgaaaagaaaagagaaaatggaaaacgg
cataaaggtttggtggcaggcaaacttggagaagagagtgatattttcaagatggtgaaa
atgatcattcagcgtcaatatgatcctgtaataattttcagctttagcaaaagggaatgt
gaatttcttgcaatgcagatggcaaaattggatcttacagaagacgatgagaaagtgaac
atagagactatcttttggagtgccatggacatgctttcagatgatgacaagaagctacct
caggtttcaaatattttaccactattgaaacgtggaataggtgtgcatcattctggcttg
cttcctatattgaaggaagtgactgagatattatttcaagaaggattaattaagtgtttg
tttgccacagagaccttcagcataggtttgaacatgcctgcaaaaactgttgtgtttaca
aatgtgcgtaagtttgatggtgacaagtttagatggatatctagtggagagtacatacag
atgagtggccgtgctggtcgtcgtggcattgatgaacgcgggatatgtatcctcatggtt
gatgacaaaatggaaccttctactgctaaaatgatgcttaaaggaagtgctgacagtttg
aacagtgcctttcatctaagctacaacatgcttttgaatcaaatccgctgtgaagagggg
agtcctgaaaatttgctccgtaattcattctatcagtttcaagctgaccacgccatccct
gatcttgagaaacaagcaaaggtccttgaagaggagagggattcaatggtaattgaagag
gaagatagtttgaagaattattataatttgctacagcaatacaaaagtttgaagaaagat
gttcgtgatattgtgttctctccaaagtactgcttaccctttctgcaaccaggcaggttt
gtttgtattgaatgcaccaggggtgatgacaactctccatctttctccactgaggatcat
caggttacatggggagtggttattgaatttgagaaggtgaaaggtgtttatgaagatgat
gccaataaaaaaccagaagattccaattacacagtgaatatccttacaagatgtgtggtt
agcaaagatggagctgggaagaaaacattgaaaattgttccgttgaaggagtctggggaa
cctcttgtcgtatctgttcctatttctcagatcattaaattaagtagcgctcggttgcct
atgccaaaggatctcttgccgttgcaaactcgagagaacatgctgaagtcgacatctgaa
tttcttgctagaaatgctagcggactgcctctagatcctgaagcaaacatggggatacga
agtagttcatatcagaagctggtccgtagaatagaggctttagagagcctatttgacaag
catgaaatttcaaagtctccgcttattgagcaaaagctcaaagtgttgcacatgaagcaa
gaattgacggccaagatcaagtcaattaagagacagatgcgttcttctactgaattggca
tttaaagatgagcttaaggcaagaaaacgagttctccgaaggctaggatatgctacaagt
gatgatgttgtagaattgaaaggaaaagttgcttgtgagatcagtagtgctgaggagctc
accctaacagagctcatattcaatggagttctgaaagatgtaaaggtagaagaaatggtg
tctcttctctcttgttttgtgtggcaagagaagctccaagatgcttcaaagcccagggaa
gaacttgaattgctatttacgcaattgcaggatacagctaggagagttgccaaagttcag
ttggagtgcaaggttcaaatcgatgtggagggttttgtgaattcatttcggcctgatatc
atggaggctgtttatgcttgggcaaaaggatccaaattttatgagatcatggaaattacg
ccggtctttgagggtagcttgatcagggcaattaggagacttgaggaagttcttcaacaa
cttatactagcggcaaagtccattggggaaactgagctcgaagcaaaatttgaagaggct
gtttccaagattaaaagagacattgtgtttgcagcatcattgtatttgtag

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