KEGG   Citrus sinensis (Valencia orange): 102622069
Entry
102622069         CDS       T02983                                 
Name
(RefSeq) uncharacterized protein LOC102622069 isoform X1
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102622069
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cit03000]
    102622069
   03019 Messenger RNA biogenesis [BR:cit03019]
    102622069
   04121 Ubiquitin system [BR:cit04121]
    102622069
Enzymes [BR:cit01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     102622069
Transcription factors [BR:cit03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    102622069
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102622069
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     102622069
Ubiquitin system [BR:cit04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    102622069
SSDB
Motif
Pfam: zf-RING_4 RRM_1 Baculo_IE-1 zf-UDP Rtf2 FYVE zf-RING_2 Nairovirus_Gn
Other DBs
NCBI-GeneID: 102622069
NCBI-ProteinID: XP_052298912
LinkDB
Position
6:join(11961957..11961982,11962779..11962878,11963054..11963181,11963270..11963423,11963547..11963656,11963879..11963962,11964051..11964099,11964191..11964282,11965150..11965288,11965548..11965627,11965708..11967122,11967780..11967887,11967985..11968535)
AA seq 1011 aa
MSSDFRFFRAIMSDKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGT
EGRCPACRTAYDKEKIVGMAANCERAVARMTSERRQKSQKAKPKPSEGRMHLTNVRVIQR
NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSKE
DDAIRCIQSVHSYILDGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKD
EIVSAFTRSRVQQIIGATNNMHRRSGNALPPPADEYINSNITSTAKPIAKNSSNIIENPN
NGSCADIVAGKSNSLPTAASWVMRVSATLPTNKNLSGPVRPPSNQPKASNGPQVPGTEVV
STTISIQTVQPMEAVATSKVHHRLDPLELGKEYIDGDCQIALSSTNEEATLDSIPATATS
NQYITCRPTSKSSEKDIATPSSRTSSSESTKPFSSPGSVEDESSHIVMDFQGLCCGLSSI
GLESQFEKDRSLPVVPNSSISKHVSVNLPGSHGPQEEKSGQFTECKSFQASMAAPTMEDS
PDFDDLQFKGLEDMHHLPPISSTPHLPRNLNQSSYLSWQAGDVSNQSNLDGHSGNVPSEH
KEVLPSRSENLISNGFINNEASSFFNLDATVQHSSLFSEVGFGSYLGKHDSMVAPLHSNV
ASDVGESSIISKILSLDSDAWEDSLTSPYSFAKLLRESNRQHDSLKMPSLFKESDCRQSR
FSFARQEEFSNHASDVEHSLSNIRHSADQHPAPNGLLKNKDIFTDKHQNAFSSSSSMDSD
NFLGSHSFISSSVSKAPTSVPPGFAVPNRAPPPGFSPHGTMQKPFDSAASHLRRMSAPAA
GNSGPCGDIPFVDPAILEVGKGLQAIGLNNLGCDMRQTPSSQLNPFDHEARLQLLMQQSS
SGYQNLRFQDYPMNRFSPPSDTYGISSTVLSQPQPDNLSSFTQSPAQQYRNAHMSTGHLG
SLKGVKSINDLGVSDLMTNRGIGFNKFIPSYEDLKCQMSNSSNLYNRGFAM
NT seq 3036 nt   +upstreamnt  +downstreamnt
atgagttctgattttcgatttttcagggcaatcatgagtgacaaggcagagaagacatgc
ccactatgcgccgaggagatggatttgactgatcagcagttgaagccatgcaactgtggt
tatgagatatgtgtttggtgctggaaccacattatggaaatggctgagaaggatggtact
gagggtcgctgcccggcatgtcgtactgcttatgacaaagaaaaaattgtggggatggca
gctaactgtgagagagcggtggctagaatgacttcagagcgtagacagaaatcacagaaa
gcaaagcctaaaccatctgaaggaaggatgcaccttactaatgttagagttatccaacgg
aatctagtgtatataattggattacctattaatcttgcagatgaagatcttcttcagcga
aaggagtatttcggccaatatggaaaagttttgaaggtgtctatatctcgaactgcaact
ggggatattcagcattctgcaaacaacagttgttgtgtatatattacttactcaaaagag
gatgatgcaattcgatgtattcaatcagtgcatagttatatcttagatggtagaccctta
agggcatgtttcggaactacaaagtattgccatgcatggataagaaacatgccttgcagc
gttccagattgtttgtatttgcatgattttggctctcaagaagatagttttacgaaggat
gaaatagtttcagcatttacaaggagtagagttcaacaaattattggtgctacaaataat
atgcatcggcgttctggaaatgctttacctcccccagcggatgagtatatcaatagcaat
ataacatcgacggccaaacctattgccaaaaattcttcaaatattattgagaatccaaac
aatggatcttgcgcagatattgttgctggaaaatccaattcacttcccacagcagcctca
tgggtcatgcgtgtttctgctactctgccaacaaataaaaatttgtcaggtccagttaga
cctcctagcaatcagcccaaggcatctaatggtccccaagttcctggaacagaagtagtg
agcaccactatatcgatccagactgtacagccaatggaagctgtagcaacctccaaagtg
catcataggttggacccactggaattggggaaagagtacatcgatggtgattgtcaaatt
gctttatcaagtaccaatgaagaagctactttagattcaattccagccactgcaacatcc
aaccagtacataacttgtcggccaacttcaaagagcagtgagaaagatattgcaacccca
tcctccaggacaagctcctcagaaagtaccaaaccattctctagccctggttcagttgag
gatgaaagttctcatattgttatggattttcagggcctatgctgtgggttatcatcaatt
ggccttgagagtcaatttgagaaagatcgctcccttcctgttgtccctaacagttcaata
tctaaacatgtttcagttaacttgcctggcagtcatggtccacaagaagaaaaaagcggc
caatttactgaatgtaaaagttttcaagcatcaatggcagctccaacaatggaggattca
ccagattttgatgatctgcaatttaaaggcttagaagacatgcatcatctaccacccatt
tcatctacacctcatttgccacgtaatttgaatcagtcaagctatctctcgtggcaggca
ggtgatgtcagcaatcaaagtaatcttgatggacattctggaaatgtgccctcggaacat
aaagaagtgttgccttcgagatctgagaacttaatatctaatgggttcattaacaatgaa
gctagtagcttttttaatttggatgcaacggtccagcattctagtctgttctcagaggtg
gggtttggaagttacttgggaaaacatgatagcatggttgcccctttacactctaatgtt
gcttcagatgtgggggaaagcagcatcatctcgaagattttgtctttagactcggatgcg
tgggaagattcgttgacctccccatacagtttcgctaaattgttgagggaaagtaataga
caacatgattccctcaaaatgccaagcttattcaaggaatcagactgcaggcagtccagg
ttttcatttgccagacaggaggaattttctaatcatgcatctgatgtggagcattctctt
agtaatatcaggcattcagctgatcaacatcctgccccaaatggtttgttgaaaaacaag
gatattttcacagacaaacatcagaatgccttttcatccagtagctctatggactctgat
aattttcttggcagtcattcttttatttcatcatctgtttcaaaagctccaacttcagtc
cctccaggatttgcagtgccaaacagggcaccgcctccgggtttttctcctcatggaaca
atgcagaagccttttgacagtgccgcaagtcatttgcgacggatgtctgctccagcagct
ggaaacagtggcccatgcggtgacatcccattcgttgatcctgcaatactagaagttggt
aaagggttgcaggcaatagggctgaataatcttggctgtgatatgagacaaaccccatct
tcacagcttaatccttttgaccatgaggcaagacttcagctgctgatgcaacagtcaagt
tctggatatcagaacctgaggtttcaagattacccaatgaatagattttctcccccaagt
gatacttacggaatttcgtctacagtgcttagtcaaccccaacccgataatttatcttca
tttacacaatcaccagcccaacaatacagaaatgcacacatgtcaactggccatttgggt
agtttgaaaggggttaagagcattaatgatctgggcgtctctgacttaatgacaaatagg
gggattgggtttaacaaatttattccgagttacgaggatttaaagtgtcaaatgtccaat
tccagtaatctgtacaacagaggatttgcaatgtaa

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