Citrus sinensis (Valencia orange): 102622087
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Entry
102622087 CDS
T02983
Name
(RefSeq) uncharacterized protein LOC102622087 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102622087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cit03021
]
102622087
03019 Messenger RNA biogenesis [BR:
cit03019
]
102622087
Transcription machinery [BR:
cit03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102622087
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
102622087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
102622087
NCBI-ProteinID:
XP_006485531
LinkDB
All DBs
Position
4:complement(join(11007209..11007880,11008771..11008833,11008912..11009005,11009566..11009635,11010572..11010648,11010738..11010841,11011904..11012443,11012524..11012595))
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AA seq
563 aa
AA seq
DB search
MQPLFNAFANQTQSNSSTSTLPQMQAFRPNMLQNSVPMQPQTGIMNPQVPFPLSNSNMPA
TAPLMNQNNFMNASNPLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLGPNLSNL
PQQFNQNMGFSNGQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQNFVQPIKDVSGNN
TLKSCSSEPRQGQNLQPSAFMRSQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQGF
QKSHFHQMHNGKRKFGFYNDQKPKGHGNGKATKFGLANQMNQPQEKKRKSLALTYTEQEV
KQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIP
SYYLLDSKKQVRGRVENTMPLNKRGRFQNNYDKRGRNKRKDQFSKEQKLADKDSSNTSSF
NKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEV
VEEKSLLLGEEDSEGKGRRMVEHFEHDENRERMHHNIQGFEDENDDEEEDNDNGEQMKVY
IAGKGNTNDEHVRLEEEEGEIID
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcaacctctcttcaatgcttttgctaatcaaacccagtccaattcttccacttctacg
cttcctcagatgcaggcttttagacctaatatgttacaaaattcagtgccaatgcaacct
caaacgggtataatgaaccctcaagttccatttcctttgagtaattccaatatgccggca
acagcaccgttgatgaatcaaaataatttcatgaatgcttctaaccctcttcttatcgca
caaagtaatcatctgggtttgcctcaactgggtcatatgtttcctgtacatgggaatttc
ggcaacatgccgctgaatgtaagtcaaggacagttacttggtcctaatttgtcgaatctg
cctcaacagtttaaccaaaacatgggtttctcaaatgggcaaatgtgtctgcaaagtgtg
aatcaacttttgtctatgcaaatgtcaaatccctgcttgtttgggaatccacagtttggt
cttgtgaaccaaaatcagcaaaactttgttcagccaataaaggatgtgtcaggaaataat
acccttaaatcttgttcaagtgagcctcgtcaaggtcagaacttgcaaccttctgctttc
atgaggtcacagaggaactttattcaaaatggtcagggtagcatttcaaagagcaattct
aaaaaagtttcaggaaaaaacttcatcaaaaatcgaacaaaagagttttcacaggggttt
cagaaatctcactttcatcaaatgcataatgggaagagaaaatttgggttttataatgat
caaaaacctaaaggacatggcaatggaaaggcaacaaaatttggtctggctaatcagatg
aaccaacctcaagaaaagaaaagaaaatctcttgctttgacctatacggagcaagaggtc
aaacagtggtgtgaagagcgtaggaagaactatccaacaaaagccaatataaacaagaaa
ctgactgaaaagcaatcaaactctgatgttattgataaagaggccaaaatgcgacgtgag
caactcaaggagatcttggcaaagcaggctgagctgggtgttgaagttgcagaaattcca
tcgtattatcttttagattcaaagaaacaagttcgtggaagggtggagaatacaatgcca
ttgaataagagggggagatttcagaacaattatgataaaagaggaagaaataaaagaaaa
gatcagttttcaaaggagcaaaagttagcagataaggattcatccaacacctcttctttc
aacaagaagaagccaacacttctgcaaaagcttctgagtgcagatgtaaagagagataaa
agccatttgttacagacttttcggttcatggcaattaattcatttttcaaggattggcct
gagaagcccgtaaactttcctttggttatggtcaaagatggtggggctgctggtgaggtg
gttgaagagaaatccttgcttttaggtgaagaagattctgaaggaaaaggcagaaggatg
gttgagcattttgaacatgatgagaatagggaaagaatgcaccataacatacaaggtttt
gaggatgagaatgatgatgaggaggaggataatgataatggagaacaaatgaaagtttat
attgcaggaaaaggtaatactaatgacgaacatgtgaggcttgaggaagaagagggagaa
attattgactag
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