Citrus sinensis (Valencia orange): 102622377
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Entry
102622377 CDS
T02983
Name
(RefSeq) THO complex subunit 4D isoform X1
KO
K12881
THO complex subunit 4
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03013
Nucleocytoplasmic transport
cit03015
mRNA surveillance pathway
cit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102622377
09122 Translation
03013 Nucleocytoplasmic transport
102622377
03015 mRNA surveillance pathway
102622377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102622377
03041 Spliceosome [BR:
cit03041
]
102622377
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102622377
TREX complex
102622377
Spliceosome [BR:
cit03041
]
Complex C
Other components
EJC/TREX
102622377
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102622377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_10
Motif
Other DBs
NCBI-GeneID:
102622377
NCBI-ProteinID:
XP_006482106
LinkDB
All DBs
Position
6:join(22891227..22891430,22892295..22892438,22892523..22892591,22893473..22893660,22894245..22894295,22895169..22895388)
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AA seq
291 aa
AA seq
DB search
MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRGPLSNAR
PSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFS
EIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAEI
PLQARVNVTGVNGRRKRTVVMTSGSGNAGGAAAINHGPGSQGRRGGLRRSSQGRGRGQGQ
GRGRGRGGGGGGGRGRGRGRGRGQGKKNPVDKSADDLDKELDNYHAEAMQI
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggctacgcatgttgacatgtctcttgatgacattataaagagcaggaaaaagagtgag
agagaaagaggacagggcagggcccgccgtggccgtggtcgtggccgtggcccaagtggt
agtgttagtggtggaagaatgacaggggctgctcgtagaggtcctctctccaatgctcga
ccatcatcatataccattgccaagtcttttcgcagaaccaggaactttccctggcagcat
gatttgtttgaggatagccttagggctgcaggaatatctggaatagaagttggcacaaaa
ttatatgtttccaacttgcatcctggagtgaccaatgacgatataagggagcttttctct
gagattggcgagctgaaacgatatgccattcactttgacaagaatggccgccccagtggt
tcagctgaagtggtatatgccagaagaagtgatgcatttgcagctcttaagcgatacaat
aatgtactgttggatggaaaaccgatgaagattgaagttgtgggaactaatgcagaaata
cctctgcaagctcgtgtgaatgtaactggagtaaatggaaggaggaagaggacagtggtg
atgacgtcgggatcaggtaatgcaggaggtgcagcagctattaatcatggacctggcagt
cagggccgtcgtgggggtctgaggcggagtagccaaggccgtggtcgtgggcagggccag
ggtcgaggccgtggccgtggaggtggagggggaggtggccgtggccgtggccgtggccgc
ggccgtggccaggggaaaaagaatccagttgataagtcagctgatgatcttgacaaagaa
ctggataattatcatgctgaagccatgcagatttag
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