KEGG   Citrus sinensis (Valencia orange): 102622533
Entry
102622533         CDS       T02983                                 
Name
(RefSeq) uncharacterized protein LOC102622533 isoform X1
  KO
K06100  symplekin
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    102622533
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cit03021]
    102622533
   03019 Messenger RNA biogenesis [BR:cit03019]
    102622533
Transcription machinery [BR:cit03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     102622533
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     102622533
    U7-dependent histone pre-mRNA processing factors
     102622533
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N CRM1_C
Other DBs
NCBI-GeneID: 102622533
NCBI-ProteinID: XP_006472379
LinkDB
Position
5:complement(join(30724182..30724296,30724684..30724787,30724874..30724957,30725065..30725109,30725766..30725837,30725908..30725988,30727445..30727540,30728023..30728097,30729546..30729593,30729705..30729788,30729875..30729985,30730387..30730449,30730541..30730705,30731712..30731858,30731988..30732035,30732144..30732389,30732467..30732580,30733405..30733473,30733673..30734290,30734405..30735010,30735103..30735228,30735972..30736146,30741263..30741425,30741561..30741663,30742178..30742270,30742919..30743078,30743858..30744060))
AA seq 1337 aa
MAAASRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPES
LVRKSLIETIEDIGLKAMEHSSILVPVLLAFLRDGDSRVAGKSIVCGTNFFCRVLEEITM
QFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDF
ENFTKEGSKQTFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQSACNLPGSVIITVVN
CLAAIGRKRPLHYNTILSALLDFNPNFETGRGCHAASVQYSLRTAFLGFLRCTNPTILES
RDRLLKALRAINAGDTADQVVRQVDKMIRNSERARENRVDRNDQPSTQLPLLGDLLKKRS
MPQDNEERNNGLDVASKRVRYGPNNHLAMSAQMNESWQDSVSVNGVSPSVPLLDSDLNPV
EQMIAMIAALLAEGERGAESLELLISNIHPDLLADIVISNMKHLHKTPPPLTRLGNLPVT
RQIGSLSSPAQVVVLPSQINTMQSSLLTAQVQLPSSVAAISSSLSDTATGNTSATDSKRD
PRRDPRRLDPRRVATPVGVPSISTTEDAGPVQSEFDDSSSITRPPSLDITTSAENLPAPL
MTSAKSDDMTFESPSVCKMDQPNAEEGLSRSEEIVTLPEVCASSDHRISSRAVDEDSAVV
ELSDVEVYGTSTSSLVESDQHTSAVSNASAWEETCKDLPPLPLFVELTEEEQKSVRTFAV
ERIFESYKHLQGTECSQTRMGLLARLIAQIDADEDIVMMLQKYVVANYQEQKGHELVLHI
LYHLQSLMISSSNENSSYAAAVYEKLLLAVAKSLLDTFPASDKSFSRLLGEVPVLPDSVL
QLLGNLCSSAVFDLHGKEVRDGERVTQGLGAVWSLILGRPYYRQACLDIALKSAAHSQDE
IRAKAIRLVSNKLYQLSYITENIEQYATNMMLSAVNQHSSNLECSQSDSADLKAEGEVGS
QETSISGSQVSEPGTFEMDSVKGGQPISHSLSTISFPEAQRLTSLFFALCTKKPRLLQLI
FDKYVQAPKSVKQAFHRHIPILIRALGSSCSELLHIISDPPQGSENLLTLVLQILTQETT
PSSDLIATVKHLYETKLKDATILIPMLSSLTKNEVLPIFPRLVDLPLEKFQMALAHILQG
SAHTGPALTPVEVLVAIHDIVPEREGLALKKITDACSACFEQRTVFTQQVLAKALNQMVD
QTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVSKQVWRMPKLWVGFLKCVSQTRPHSF
PVLLKLPPPQLESALNKYANLRGPLATYASQPSLKSSIPRSILAVLGLANESHMQQLHIS
SLNPSDTGSSEHGATPT
NT seq 4014 nt   +upstreamnt  +downstreamnt
atggccgctgcgtccagagaccaagcactctcgctcctcgccgccgccaacaaccatggc
gatttggctgtaaagctctcttccttgaagcaggtgagaggtattttatcatccgctgac
ccgtctttggcggctgaactcttcccttacttggtcgagctccagtcttctcccgaaagt
ctcgttcgaaaatcgctaatcgagactattgaagatattggtttgaaagcgatggagcat
tcttctatactcgtgcctgtcttattggcatttttgagggatggcgactctcgtgttgca
gggaaatctattgtttgtggcacaaatttcttttgccgtgttctagaagagataacaatg
cagtttcgctggcatggtaaagttgagcggtggcttgaagaactttggacatggatggtt
aggttcaaagatgctgtctttgcaattgcattggagcctggtttagttggcacgaagttg
ttggcactgaaatttttggaaacacatgttttactttttacgtctgactcaaatgatttt
gaaaattttaccaaggaaggaagtaaacaaacttttaatatatcatggctgtcgggagga
catcctttcctagatccagtttcactcacgtcagaagcaaatagaatgcttggcacctta
atggatttgttgcaatcagcttgtaatctccctggttcagtgattattactgttgtcaat
tgtcttgcagctataggaaggaaaaggcctcttcactataatacaattctttctgcactg
cttgacttcaatccaaactttgagacaggaaggggatgccatgctgccagtgttcagtat
tccttaaggactgcctttttgggattcctaaggtgtactaatccaacaatcttagagtca
agagacaggttgcttaaagctctacgagcaataaatgccggggatactgcggatcaagta
gttcgacaagttgataaaatgattagaaattctgagcgtgcacgtgaaaatcgggttgac
cggaatgatcagccatcaacccagctgccccttttaggagatctgttgaaaaaaaggtct
atgcctcaggataatgaagagcgaaataatggtcttgatgtggcttccaagcgggttcga
tatggtcctaacaatcatttggctatgtctgctcaaatgaatgagtcttggcaggattct
gtttctgtaaatggagtatcccctagtgttcctcttttagatagtgatttgaatcctgtg
gagcaaatgattgctatgattgctgctttgcttgccgaaggagaaagaggagctgaatcg
cttgagctacttatttcaaatattcaccctgatctgttggctgatattgtcatatctaat
atgaagcatttgcataaaacacccccacctctgacaaggcttgggaacttacctgtgact
cgacaaattggctctctaagtagtccagctcaggttgtcgtgctgccatctcaaataaat
acgatgcagtcttctcttctcactgcacaagtacaactaccttcttcagttgctgcaatc
agttcttctttgtctgatacagcaactggcaatacttctgctactgattctaaacgtgat
cccagaagggatccccgtcgtctggatccccggcgtgtagcaacccctgttggagtgcca
tccatatctaccacagaggatgctggtcctgtgcaatctgagtttgatgattctagttct
ataactaggcctccctcactagacattacgacatctgctgaaaatcttccagctcctctg
atgaccagtgccaaaagtgacgatatgacatttgaaagtccatctgtttgtaaaatggat
caacctaatgctgaggaaggactctctagatctgaagaaattgtcacccttcctgaggtc
tgtgcttcttcagatcatagaatttcttctcgtgctgttgacgaggattctgcagtagta
gaattatctgatgttgaagtatacgggaccagtacatcatctttggtggaatctgaccag
catacttcagctgtatccaatgcatctgcatgggaggagacctgtaaagatttacctcct
cttccactttttgttgagctaactgaagaagagcagaaaagtgttagaacatttgctgtt
gaacgtatttttgaatcttacaaacatcttcaggggacagagtgcagccagacccggatg
ggattgcttgctcgattgatcgctcagattgatgcagatgaagacattgttatgatgctg
caaaaatatgttgttgcaaattaccaagagcaaaagggacatgaacttgtgctgcatatt
ctctatcatctacaatcgctcatgatctctagttccaatgaaaactcttcatatgctgct
gccgtgtatgaaaaactcctcttggcagtggcgaaatctttgttggacacttttccggct
tcagacaagtcttttagtaggcttctgggtgaggttcctgttttgcctgactctgtctta
caactgttaggcaacctctgctcttctgctgtttttgatctccatgggaaagaggtccgc
gatggtgagcgtgtgactcagggcctcggtgcagtgtggagtctgattttgggtcgtcca
tattatcgccaagcctgcctagacatagctttgaagtctgctgctcattcacaagatgaa
attcgagcgaaagctattcggctggtgtcgaacaaactctatcagttaagctacataaca
gaaaatatagaacaatatgcaacaaatatgatgctgtctgctgtgaatcagcattcttca
aacttagagtgttcacagtctgattctgctgatctcaaagctgagggggaggttggaagc
caggaaacatccattagtggctcccaagtttcggagcctggaacctttgaaatggactca
gtgaagggtggacaaccaatttctcatagcctttcaactatttcatttcctgaggctcaa
cgtctgacttccttgttttttgctttatgtacaaagaaacctcgtcttcttcaacttatt
tttgacaaatatgttcaagctccaaaatctgtaaagcaggcttttcatcgccatatccca
attcttataagggcgttgggttcatcttgttctgaattactgcacataatatccgatcca
cctcaaggaagtgaaaatcttttaactcttgtgctgcaaatattgacccaagaaaccaca
ccttcctccgatctaatagccactgttaagcatttatatgaaacaaagttaaaggatgct
accattcttataccaatgctttcttcacttacgaagaatgaggtattacctattttccct
cgcctcgttgatcttcccctagagaagttccagatggcgcttgctcacatactacagggt
tcagctcatacaggtcctgctttaacacctgtagaagttttagttgccatacacgacatt
gttcctgagagagagggccttgcacttaaaaagataacagatgcttgctcagcttgtttt
gagcagcgtacagttttcacacaacaggttttagcgaaggctttgaatcaaatggttgat
caaactccactgccactactctttatgagaacagtaattcaggcaattgatgcttttcct
actctggttgattttgtcatggaaatactttccaaacttgtgagtaaacaggtgtggaga
atgccaaagttgtgggttggcttcttgaaatgcgtgtctcagacacgcccacattctttt
cctgtactgttgaagttgccacctccacaacttgagagtgctctgaataaatatgctaac
cttagaggtcccctagccacctacgccagccaaccaagcttgaaaagttcgatacctaga
tcaatccttgcagttcttggtcttgcaaatgaatcacatatgcagcagctgcatatttca
tctttgaacccatcagatacaggttcttcagagcatggagcaacaccgacgtga

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