KEGG   Citrus sinensis (Valencia orange): 102623007
Entry
102623007         CDS       T02983                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4 isoform X1
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03020  RNA polymerase
cit03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    102623007
  09124 Replication and repair
   03420 Nucleotide excision repair
    102623007
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cit03021]
    102623007
   03400 DNA repair and recombination proteins [BR:cit03400]
    102623007
Transcription machinery [BR:cit03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     102623007
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      102623007
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 102623007
NCBI-ProteinID: XP_006467222
LinkDB
Position
2:complement(join(32884409..32884516,32884994..32885062,32885136..32885169,32885289..32885366,32885442..32885553,32886024..32886122,32886201..32886269,32886389..32886460,32886985..32887057))
AA seq 237 aa
MEKGGGGKGGGVGGGGKTSLKSIPASLGGKDDNSAKSKRGRKVQFNTEGLSEGKFTFSSK
SDGKFETTYGKGGLTKGGKGDKVANGAKVSVVKEALPLELRVEQELPKNAKCLMDCEAAH
ILEGIQEQMALLSADPTIKIPVSFDKGLLYAKTHSHFTNPQAVKGLFQSLSEHGVTDGEI
CVIANICPETVEEAYAIVPSLKRMVDERICELFQAKRSRLNDLLKEVLIQLAKFKST
NT seq 714 nt   +upstreamnt  +downstreamnt
atggagaagggaggaggaggcaaaggaggcggcgtcggtggcggcggcaaaacttctctg
aaatctatccctgcatcacttggcggaaaggatgataactcagcaaagtcaaagagggga
aggaaagttcagttcaatactgaaggtttatctgaaggaaaatttactttttcttcaaaa
tccgatggaaagtttgaaaccacctatggtaaaggtggtttgaccaaaggcggaaaagga
gacaaggttgctaatggtgcaaaggtttctgtagtgaaggaagctcttccacttgagctc
agagttgagcaggagcttcccaaaaatgccaaatgcttgatggactgtgaggctgcacat
attttagagggaatccaggagcaaatggctttattgtcggcagatccaaccattaaaatt
cctgtgtcatttgacaagggactactgtatgccaaaacacatagccattttacaaatcct
caggctgtcaaaggacttttccaatctctctctgaacatggtgtcactgatggtgagatt
tgtgtgattgccaacatatgtccagaaactgttgaagaagcatatgctattgtcccatca
ttaaagaggatggtagatgaaagaatatgtgaacttttccaggctaagagaagcaggctt
aatgacctcctcaaagaagtattaattcagctagctaaatttaagtcgacatga

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