Citrus sinensis (Valencia orange): 102623395
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Entry
102623395 CDS
T02983
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
KO
K14962
COMPASS component SWD2
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102623395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102623395
03036 Chromosome and associated proteins [BR:
cit03036
]
102623395
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
102623395
Chromosome and associated proteins [BR:
cit03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
102623395
COMPASS/SET1 complex (yeast)
102623395
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_WDR3_2nd
WDR55
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_NOL10_N
NBCH_WD40
Beta-prop_NUP159_NUP214
WD40_RFWD3
PAC11
TRM82_WD
ASA1
PD40
Beta-prop_ACSF4
Beta-prop_VPS8
Tricorn_2nd
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
102623395
NCBI-ProteinID:
XP_006470261
UniProt:
A0ACB8MZ27
LinkDB
All DBs
Position
2:join(5875893..5875970,5876084..5876184,5876517..5876626,5876744..5876810,5877244..5877343,5877734..5877850,5877925..5878062,5878260..5878341,5879183..5879232,5879370..5879543)
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AA seq
338 aa
AA seq
DB search
MATTSLAELDDETVRSMAMAAIFSDFGGKINSLDFHRKDDLLVTASDDDSVRLYDIVSAK
LIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERV
ISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAFDQQGLVFAVAMEAGA
IKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCG
FSLEPSPNTNTEATFTPDGQYVVSGSGDGTLHAWNINTRNEVACWNGNIGVVACLKWAPR
RAMFVAASSVLSFWIPNPSSNSTDESTDPQATVKSDQV
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgacgtcgctcgcagaactcgatgatgaaacggtgcgcagcatggcaatggct
gcaattttctcagactttggtgggaagataaattcacttgactttcatcgaaaagacgat
ttattggtgacggctagtgacgatgactctgtgcgactttatgatattgtcagtgctaag
ttgatcaagaccacgtaccacaagaaacatggtgctgattgtgtttgctttacccatcac
ccaagctctgttatttgctcgacaaaatataatcttgattctactggagagtctctgcgg
tatctatcaatgtatgataatcgaattcttcgctacttcaaagggcataaggagagggtt
atttctctctgcatgtctccagttaatgatagctttatgtctggttctcttgaccacagc
gttagaatatgggatcttcgtgttaatgcttgccagggaattttacgtctgcgtggtaga
cctacagttgcatttgatcaacaaggccttgtctttgcggtggcaatggaagcgggtgct
atcaaattgtttgactcacgttcctacgacaagggtccctttgacacatttctagtaggt
ggggatacagcagaggtttgtgatattaaatttagcaatgatggtaaatcaatgctcttg
acaaccacaaataacaacatttatgttcttgacgcatatggaggagagaagcgctgtggt
ttcagcttggagccatccccaaacacaaatacagaagcaacttttacaccagatggccag
tatgtagtctcaggatcaggagatggaactttacacgcctggaatatcaacacacggaat
gaggtggcctgctggaatggtaatataggagtagtggcatgcttgaagtgggctccccgt
cgggcaatgttcgttgctgcttcttcagttctctcattttggatacccaatccttcttca
aattcaactgatgagtctacggatcctcaggcaactgtaaaatccgatcaagtttag
DBGET
integrated database retrieval system
