KEGG T02983: 102623490

Citrus sinensis (Valencia orange): 102623490

Entry

102623490         CDS       T02983

Name

(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 9A

K03017

DNA-directed RNA polymerase II subunit RPB9

Organism

cit Citrus sinensis (Valencia orange)

Pathway

cit03020

RNA polymerase

cit03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:cit00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    102623490
  09124 Replication and repair
   03420 Nucleotide excision repair
    102623490
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cit03021]
    102623490
   03400 DNA repair and recombination proteins [BR:cit03400]
    102623490
Transcription machinery [BR:cit03021]
Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     102623490
DNA repair and recombination proteins [BR:cit03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      102623490

SSDB

Motif

Pfam:

Zn_ribbon_TFIIS Zn_ribbon_RPB9 Zn_ribbon_4

Other DBs

NCBI-GeneID:

102623490

NCBI-ProteinID:

XP_006488857

LinkDB

Position

1:join(23906753..23906781,23906896..23906971,23907530..23907688,23908505..23908585)

AA seq 114 aa
MSTMKFCRECNNILYPKEDKDQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQ
DVAADPTLPRTKAVRCVKCQHGEAVFFQATSRGEEGMTLFFVCCNPNCGHRWRE

NT seq 345 nt +upstreamnt +downstreamnt
atgagtactatgaaattttgccgcgaatgcaacaacattttgtacccaaaagaagacaag
gatcaaaagatcctcctttatgcttgccgcaactgcgatcaccaggaggttgctgacaat
aactgcgtctataggaatgaggtacatcactctgttggtgagcgcactcaagttttgcag
gatgtggctgcggatccaactcttcctcgaactaaagctgttcgttgtgtaaaatgccag
catggtgaagccgtgtttttccaggcaacttctagaggggaggagggtatgacgctgttc
tttgtctgctgtaaccctaactgcggccaccgttggagagaataa

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