Citrus sinensis (Valencia orange): 102623779
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Entry
102623779 CDS
T02983
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102623779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cit03041
]
102623779
03009 Ribosome biogenesis [BR:
cit03009
]
102623779
Enzymes [BR:
cit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102623779
Spliceosome [BR:
cit03041
]
Complex A
U1 snRNP components
U1 related factors
102623779
Complex B
102623779
Ribosome biogenesis [BR:
cit03009
]
Eukaryotic type
Pre-60S particles
Helicases
102623779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
102623779
NCBI-ProteinID:
XP_006488770
LinkDB
All DBs
Position
1:complement(join(24504258..24505356,24505505..24505782,24506377..24506727,24506834..24507103,24507655..24507723,24508629..24508829,24509321..24510502))
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AA seq
1149 aa
AA seq
DB search
MATAEATTASLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPAALPPPLP
PGPPPAGSTPKLAPIPVAHSMQPNGMMIKQQMTQATPQEVQQVSQLPQQLGSMAAQVSDQ
HDPQQQGSQLGQSMQHPGQFAPQMMQYPVQEMPQHPGQPWLQQPGQQMQQQAVQQMSQQS
GQQSALHENSHTAQPQGHQYPHQQLQYTAYQQGIPPQGKQSSHQQTQVGAQGKQFGGQQD
YNKAAITKREEAEFPPGNQTGFSPSNFQQTGASSSQNLPGGTNSMKTGAHLGHVQQFGGS
SVTLQQPNPMVQLQQTGTDMAHHQHGPRFENQMGPQMMHNNPPNLPPFGLGRGYEDNVHC
RTGNDYYFNGNKDGPVMGPQQPKLAALPMGRNPQETRMGGAAPGQATGLNAVAGHAMHGM
YSHAGSFPNNAMMRPTFMGSPGVTDLSPAEVYRQRHEVSATGDNVPTPFMTFESSGFPPE
ILREMHSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFILLRQLHNNPR
NGPTVLVLAPTRELATQIQDEANKFGRSSRLSCTCLYGGAPKGPQLRELDQGADIVVATP
GRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEMPPHRQTLMYTATWPKD
VRKIASDLLVNPVQVNIGNVDELAANKAITQHVEVVPQMEKERRLQQILRAQERGSRVII
FCSTKRLCDQLARSIGRNFGAIAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDI
KDIRVVINYDFPNGVEDYVHRIGRTGRAGATGVAHTFFSEQDSKYAADLVKVLEGANQHV
PPEVRDMALRCGPGFGKDRGGVSRFNAGGGGGGGGHWDSGGRGGMRDGGFGGRADTRDGG
FGGRGSVRDGGFGGRGGMRDGGFGGRGGMRDGGFGGYEGRSGMFSGRGNRGRGFGGPAGG
NVGWGRNDRGPHDRYNNMDGRGRGRGRGRFDNRRDIADRSSRGRSRSRSPDRVRTWGYSS
RSRSRSRSSRSSSSSWSRSRSWSRGHSRSPSPSHNRSHSRSRSRSRSRSYDRYERPLDRK
DRRVSGFDVLPESQTSSMVPAAPMSPGLRGGVLPATGPTVLLQLVDSSVTEPVLPGKGAD
PDHQSVTEL
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagcagaagctactactgcttctcttggcccacggtatgctccagatgatccc
actcttccaaaaccttggaagggattgattgatggaagcacaggtctactatattattgg
aatccggaaactaacgtcactcagtatgagaaaccagctgctttgcctcctccactgccg
cctgggccacctcctgcaggttctacccctaaactggctccaataccagtggcacattct
atgcaaccaaatggtatgatgattaagcagcagatgacacaagccacaccgcaagaggtt
caacaagtgagccagttgcctcaacagcttggatcaatggcagcacaggtttctgaccag
cacgatccacagcaacaaggttcacagctaggccagtccatgcaacatccagggcagttt
gcaccacaaatgatgcagtatcctgttcaggaaatgcctcaacatccaggtcagccttgg
ctacagcaaccaggacaacaaatgcaacaacaggctgttcagcagatgtcccagcagtct
gggcagcaatcagcgctgcatgagaactcacatacggcacagcctcaaggacatcaatat
ccacatcagcagttgcagtacacggcttatcagcaaggtattcctccgcaagggaaacaa
agttcacatcagcagacacaagttggagcacagggaaagcagtttggcggtcaacaagat
tacaataaggctgcaatcacaaagagggaggaagctgagtttccaccaggaaatcaaaca
gggttttccccatctaatttccaacagactggtgcttcatcttctcaaaacctccctggc
ggaaccaattcaatgaagacaggtgcacatttgggtcatgttcagcagtttggtggttct
tcagtcactttgcaacagcctaatcccatggttcaactgcagcagactgggactgatatg
gctcaccatcagcatggtcctaggtttgagaatcaaatgggtccacaaatgatgcacaat
aacccgcccaatctaccgccttttggattaggtaggggttacgaggataacgtacattgt
agaactggaaacgattactattttaatggtaacaaggatggaccagtcatgggtccgcag
cagcccaagcttgcagccttgcccatggggagaaatccacaggagacaaggatgggtggt
gctgctcctggtcaagctactggtttgaatgctgtagccgggcatgccatgcatggtatg
tacagtcatgcaggttcttttccaaataatgctatgatgcggccaaccttcatgggatca
cctggtgtcactgatctgtcacctgctgaagtctaccgccaacgacacgaagtatctgcc
acgggtgacaatgttccgacgccgttcatgacatttgaatccagtggctttcccccagag
attttgagagagatgcattctgctggattttcatcccctactccaatccaggcacaaacg
tggcctattgccctgcagggtagggacatagtggcaattgccaaaacaggttctggtaaa
acattgggctacttgatccccgccttcattcttttacgacagcttcataataaccctaga
aatggcccaacggtgttggttctagctccaacgagggagttagccacacaaatacaagat
gaggccaacaagtttgggagatcttcaaggttatcttgcacgtgcttgtatggtggagct
ccgaagggccctcagttgagagaattggatcaaggagctgatatcgttgtggccactcct
ggtcgacttaatgacattcttgaaatgaagaaaattgattttggacaagtatcattgctt
gtgcttgatgaggcagatcgaatgctagacatgggcttcgaaccacaaatccgcaagatt
gttaatgagatgcctccacacagacagactcttatgtatacagcaacgtggcccaaggat
gttaggaaaatagccagtgatctacttgtcaaccctgtccaggtgaacattggcaatgtt
gatgagcttgctgcaaacaaggctatcacacagcatgttgaagtagttccacaaatggag
aaggagaggcgattgcagcagatacttagagcccaagaacgaggttcaagggttattata
ttctgttctacaaagaggttgtgtgaccaacttgcacgtagcattggacgcaactttgga
gcaattgcaatccatggagacaagtcacaaggtgagagagactgggttttaaatcagttc
cggagtggaaagtccccaatattagttgccactgatgtagctgctcgggggcttgacatt
aaagatataagggtagtgatcaactacgattttcctaatggggttgaagattatgtccat
cgaattggaagaactgggagggctggtgcaactggagtagcgcacacctttttttctgag
caggactcaaaatatgcagctgatttggttaaggttctggagggggctaaccagcacgtt
cccccagaagtgcgagatatggctttgcgttgtgggcctggttttggtaaggatcgaggt
ggtgtgagccgtttcaatgctggtggtggtggtggtggtggtgggcattgggattctggg
ggccgtggtggcatgagagatggtgggtttggtggccgtgccgacacgagggatgggggc
tttggcggtcgtggtagcgtgagggatggtggctttgggggacgtggtggcatgagggat
ggtggctttggtggacgtggtggcatgagggatggtggctttggtggatatgaagggaga
agtggcatgttttctggtcgtggaaacaggggacgtggatttggtggtcctgctggcggt
aatgttgggtggggaaggaatgaccgtggtccgcatgatcggtacaataatatggatggt
cgtggacgtggtcgtggacgaggtcgatttgataacagaagggatattgctgataggagc
agcaggggcagaagtcgtagtcgtagtccagatagggttcgtacatggggttacagcagc
aggagcagaagcagaagcaggagcagtaggagcagcagcagtagctggagtaggagtagg
agttggtcccgtggccacagtcgcagccccagccctagtcataaccgcagccacagtcgg
agtcgcagccgcagccgcagccgcagctatgacagatatgagaggccacttgaccggaag
gatcgtagagtttcaggatttgatgtccttcctgaatcacagacatctagcatggttcca
gcagctcctatgtccccaggtttgcggggtggtgtgttaccagcaactgggccgacagtg
ttgttacagctggttgatagttctgtgactgagcctgtgcttcctggtaaaggagcagat
ccagaccatcaatctgtgacagaactgtaa
DBGET
integrated database retrieval system
